PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942838.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 299aa MW: 33049.1 Da PI: 6.6024 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.6 | 3.5e-11 | 226 | 273 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ + Er+RR+riN+++ L+ l+P+ +K + +++Le+Av+Y+k Lq XP_010942838.1 226 TSQSLYERKRRERINKRLRILQYLVPNG-----TKADISTMLEEAVQYVKFLQ 273 667788********************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.03E-14 | 221 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-14 | 222 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.078 | 223 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-8 | 225 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-10 | 229 | 278 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.52E-11 | 232 | 277 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MESEGLVSEA SWNSFDVAMS AKESDMIAHL LGGHQFLNEL DQDRRIEMPP IFWPDHGADL 60 YHCLDEMNHN SYCFSPVTSS TSTSSFSLPL ANNGGYYSSD SNAVLEISTS PTTKDFSTGK 120 EQIIAQSLPA VSCHQFNEPI CVTMKISSDE FRVSKEKTLV PALPSHQNSQ AIKKRIHVSD 180 AEQPTTNEKD GISIGSPKKK ARASAPEMNG GGGASSRSAP SPSEKTSQSL YERKRRERIN 240 KRLRILQYLV PNGTKADIST MLEEAVQYVK FLQLQIKLLS SHELWMYAPT AYNGINIGL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 236 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116437.1 | 0.0 | transcription factor bHLH85-like | ||||
TrEMBL | A0A2H3XQD2 | 1e-146 | A0A2H3XQD2_PHODC; LOW QUALITY PROTEIN: transcription factor bHLH84-like | ||||
STRING | XP_008787223.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11680 | 28 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 3e-27 | bHLH family protein |