PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 32674.2 Da PI: 4.8828 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 58 | 1.7e-18 | 34 | 83 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR +iN++f+ Lr+l+P++ ++K +Ka+ L +++eYIk Lq XP_010942265.1 34 RSKHSATEQRRRCKINDRFQILRDLIPHN----DQKRDKASFLLEVIEYIKFLQ 83 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.3E-23 | 31 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.984 | 32 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.32E-19 | 32 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.48E-17 | 34 | 87 | No hit | No description |
Pfam | PF00010 | 5.6E-16 | 34 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-14 | 38 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
METVSRSSED EVELAVKGDG KSSEQKPSTP TTPRSKHSAT EQRRRCKIND RFQILRDLIP 60 HNDQKRDKAS FLLEVIEYIK FLQEKVQKYE SYQGWGQENA KLMPWSNSQG PADGLSDPSH 120 VLKNGPAPPG FMFTGKFVDN SIPIAPTMLS NTQNVAEPDM NTGTDSDNMA SQAQPQWQRS 180 SGPADCTISS DMLNVQEELA IDEGTISMSS VYTEGILTTL TQALESLGID LSQASVSVQI 240 NLGKRANSRR PTATTTMSSA KDLEEPSAFN QVMEDSRVGS SGEESERAPK RHKTDKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942265.1 | 0.0 | transcription factor BIM2 isoform X2 | ||||
Swissprot | Q9CAA4 | 9e-62 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A2H3YF49 | 0.0 | A0A2H3YF49_PHODC; transcription factor BIM2-like | ||||
STRING | XP_008797597.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 5e-64 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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