PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942265.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 297aa    MW: 32674.2 Da    PI: 4.8828
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942265.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH581.7e-183483255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h++ E+rRR +iN++f+ Lr+l+P++    ++K +Ka+ L +++eYIk Lq
  XP_010942265.1 34 RSKHSATEQRRRCKINDRFQILRDLIPHN----DQKRDKASFLLEVIEYIKFLQ 83
                    889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.3E-2331105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.9843282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1932101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-173487No hitNo description
PfamPF000105.6E-163483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-143888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
METVSRSSED EVELAVKGDG KSSEQKPSTP TTPRSKHSAT EQRRRCKIND RFQILRDLIP  60
HNDQKRDKAS FLLEVIEYIK FLQEKVQKYE SYQGWGQENA KLMPWSNSQG PADGLSDPSH  120
VLKNGPAPPG FMFTGKFVDN SIPIAPTMLS NTQNVAEPDM NTGTDSDNMA SQAQPQWQRS  180
SGPADCTISS DMLNVQEELA IDEGTISMSS VYTEGILTTL TQALESLGID LSQASVSVQI  240
NLGKRANSRR PTATTTMSSA KDLEEPSAFN QVMEDSRVGS SGEESERAPK RHKTDKS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942265.10.0transcription factor BIM2 isoform X2
SwissprotQ9CAA49e-62BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A2H3YF490.0A0A2H3YF49_PHODC; transcription factor BIM2-like
STRINGXP_008797597.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.15e-64BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]