PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010942244.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 436aa MW: 47130.5 Da PI: 7.1117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 322 | 370 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_010942244.1 322 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 370 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.06E-10 | 317 | 374 | No hit | No description |
SuperFamily | SSF47459 | 4.58E-17 | 317 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.516 | 319 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.6E-17 | 320 | 387 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-6 | 322 | 370 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.4E-10 | 325 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 436 aa Download sequence Send to blast |
MEMNANDKFG MEKRSGVHLN HHISGVSADC QFGTPSMGAV PANPAIAMSQ GVSMISSSSP 60 SVPGVDFFGP GLWSHPANPQ NLGFSNAQTN TGASSSIPIG KPVAVSSRGM FLQAIPGVLP 120 PNLSHFPADS AFIERAARFS CFNGGNFSGM MNPFGPSESL TPHPTASRGV TGTQGHKSEL 180 NMTEVPRDIT VPIDHGSSSG SPLKNQRDKG SYLVGGLSNV SREANFTEVD QEKSTELANA 240 AGNSSSSDLG SKKRKRSNQD MELDQVQRGT QLSMENTKDN AETEQNLEQN SSRPNGKQAK 300 DSTEGSKEDY IHVRARRGQA TNSHSLAERV RREKISERMK YLQDLVPGCS KVTGKAVMLD 360 EIINYVQSLQ RQVEFLSMKL ATVNPRVDCN IEGLLSKDIP NVWDDELHNV MQLSYSTNPP 420 LNTKELNGKP RDGFPI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 251 | 256 | KKRKRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010942244.1 | 0.0 | transcription factor bHLH49 isoform X3 | ||||
TrEMBL | A0A2H3YEH0 | 0.0 | A0A2H3YEH0_PHODC; transcription factor bHLH49-like isoform X2 | ||||
STRING | XP_008797585.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-86 | bHLH family protein |