PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942243.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 501aa    MW: 54040.4 Da    PI: 7.7272
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942243.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.3e-09322370355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  XP_010942243.1 322 NSHSLAERVRREKISERMKYLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 370
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-10317374No hitNo description
SuperFamilySSF474595.76E-17317387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.516319369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-17320387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6322370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEMNANDKFG MEKRSGVHLN HHISGVSADC QFGTPSMGAV PANPAIAMSQ GVSMISSSSP  60
SVPGVDFFGP GLWSHPANPQ NLGFSNAQTN TGASSSIPIG KPVAVSSRGM FLQAIPGVLP  120
PNLSHFPADS AFIERAARFS CFNGGNFSGM MNPFGPSESL TPHPTASRGV TGTQGHKSEL  180
NMTEVPRDIT VPIDHGSSSG SPLKNQRDKG SYLVGGLSNV SREANFTEVD QEKSTELANA  240
AGNSSSSDLG SKKRKRSNQD MELDQVQRGT QLSMENTKDN AETEQNLEQN SSRPNGKQAK  300
DSTEGSKEDY IHVRARRGQA TNSHSLAERV RREKISERMK YLQDLVPGCS KVTGKAVMLD  360
EIINYVQSLQ RQVEFLSMKL ATVNPRVDCN IEGLLSKDLF QFRGGSSSMI GFSPNMIHPQ  420
LHPSQQGLVQ PGISGMGSPS DAVRRAMNAQ LTVMSGFKEP TPQIPNVWDD ELHNVMQLSY  480
STNPPLNTKE LNGKPRDGFP I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010942243.10.0transcription factor bHLH49 isoform X1
TrEMBLA0A2H3YEH30.0A0A2H3YEH3_PHODC; transcription factor bHLH49-like isoform X1
STRINGXP_008797585.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29093785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-98bHLH family protein