PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010942051.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 312aa    MW: 34373.7 Da    PI: 8.1277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010942051.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11133180355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A ++Ik+Lq
  XP_010942051.1 133 QDHIIAERKRRENLSQRFIALSAVIPGL-----KKVDKASVLGDAARHIKELQ 180
                     6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.672130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-16134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-15134192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.27E-11135184No hitNo description
SMARTSM003536.5E-13136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.201241312IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSFNQFTLQ VAPAPVGQQS LSSESYTSHP SNHLVANAPQ TGFIERPKKA QKINSWSSHN  60
TEKNTTFGLD APSPDSLSFH NPKSPNKNAS VRAVASQEEM RPLVSHGSAQ NYETITQQVS  120
RMTKMGPVPS QAQDHIIAER KRRENLSQRF IALSAVIPGL KKVDKASVLG DAARHIKELQ  180
ERVKTLEDQN ATRTVESKVL IKKSKLSADD DRSSSNEFSN GCSSEEPLPE IEVMLSEKTV  240
LVRIHCENQR GVLARLLSEI EKVHLAVTNA SIMPFLTSSI NITVAAEVEE EFSMTVEDLA  300
RKLNSALRNS CT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019711254.10.0transcription factor bHLH25
SwissprotQ9T0721e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2H3ZN280.0A0A2H3ZN28_PHODC; transcription factor bHLH18-like
STRINGXP_008787362.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-61bHLH family protein