PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941955.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRF
Protein Properties Length: 567aa    MW: 61378.1 Da    PI: 7.4227
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941955.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.6e-24192236145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  XP_010941955.1 192 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 236
                     79****************************************985 PP
2QLQ59.68.8e-21122158137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT++Q+++L++Q+l+yKy++an+P+P+ Ll  i++
  XP_010941955.1 122 GPFTPSQWMELEQQALIYKYMNANAPIPASLLISIRR 158
                     59******************************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.5E-12122158IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.178123158IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-15123156IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.663192236IPR014977WRC domain
PfamPF088796.6E-21193235IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDGLVGASSP CGGVFSSPPA YSDHETKRKN GFFRSGLLKQ GRPCGPEEHD WRYLKVARTE  60
APSLSPDGEQ MLSFSSSKPD AFLFRSEPHT STPSASSYVG NAGLISGSLD GSMHGVLAGV  120
RGPFTPSQWM ELEQQALIYK YMNANAPIPA SLLISIRRSL SSSRFTSFSA GSLGPNTFGW  180
GSLHLGFSGN ADPEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKPVEGQNGH  240
AAKTMPVIAA TPTAPAVSGS GSSNCFTVAQ QQINNVKPSI THSSFTQFDR VLVNKELDNS  300
HDLSMLYSVN SEPRETSFPI PKQHNPFEES PSRANYGLIS SDSPFKSTTN CYLGNDNFVS  360
CTEFSDQDPP TDPLGQFIKE WHRKCSNSST ITWPEREMNS DKTQFSVSIP VASSDFSSSS  420
SPTHEKHTPS PLKLSLDSGP DNMNLGVGGL PNDGNQQQAS WLPTSWESSM GGPLGEVLAN  480
TCITLMDHSK NCSSLNLMTN GGDLSPQLRS SRAGVLHKTN FGSLSGSTRS SPIVEKHNVQ  540
DSIDSLHEDL IGSNLVNPST ITSSTFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941955.10.0growth-regulating factor 6-like
TrEMBLA0A2H3YDE10.0A0A2H3YDE1_PHODC; growth-regulating factor 6-like isoform X1
STRINGXP_008796979.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-71growth-regulating factor 1