PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941677.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YC
Protein Properties Length: 236aa    MW: 25645.3 Da    PI: 5.2663
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941677.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1681.2e-52811841101
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   ie++tdfknh+lPl+rikk++kad dvkmisae+Pv+++kace+f+leltlrsw+haeen+rrtl+k+diaaav++tdifdfl
  XP_010941677.1  81 QLQAFWATQmanIEQSTDFKNHSLPLSRIKKVMKADADVKMISAEVPVIFAKACEMFVLELTLRSWNHAEENRRRTLQKNDIAAAVAETDIFDFL 175
                     89******98888********************************************************************************** PP

           NF-YC  93 vdivprdel 101
                     vdi+pr e 
  XP_010941677.1 176 VDIIPRAES 184
                     *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.72E-3077175IPR009072Histone-fold
PfamPF008081.3E-18103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.5E-35104181IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQSKYLGVTL VMEQPTQPSQ PVMGGVPSAA QSAYTSPYQS AAMVTGAPAV IGAMPPGIQL  60
ASTFPTNPHQ LAYQIQQKHQ QLQAFWATQM ANIEQSTDFK NHSLPLSRIK KVMKADADVK  120
MISAEVPVIF AKACEMFVLE LTLRSWNHAE ENRRRTLQKN DIAAAVAETD IFDFLVDIIP  180
RAESKEEGSR IASAALPAIS AQANSMPYYY VPPQDLVTGA EMIMGEPGDQ SSTGAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B5e-5588181295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941677.11e-175nuclear transcription factor Y subunit C-4
SwissprotQ655V52e-73NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A3Q0HPU21e-113A0A3Q0HPU2_PHODC; nuclear transcription factor Y subunit C-4-like
STRINGXP_008776393.11e-113(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.31e-62nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]