PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941616.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | G2-like | ||||||||
Protein Properties | Length: 295aa MW: 34119.3 Da PI: 8.3983 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.3 | 1.3e-31 | 25 | 78 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+eLH+rFvea+++LGG+++AtPk+il+lm+vkgL ++h+kSHLQ+YR+ XP_010941616.1 25 PRMRWTEELHRRFVEAIDRLGGQNRATPKHILQLMEVKGLNISHIKSHLQMYRS 78 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.524 | 21 | 81 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-29 | 21 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.87E-16 | 23 | 80 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-24 | 25 | 78 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-8 | 26 | 77 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MKRNNQKMRG FERRGVRQYN RSEAPRMRWT EELHRRFVEA IDRLGGQNRA TPKHILQLME 60 VKGLNISHIK SHLQMYRSVS NRANRCNFLS TKDLNKQKMV RQGNADAYNS SNWEDSHLNC 120 TSSDIHSFQI PSFEELMRHW ATKNGVYDSI IGFRQTRDAV SRHNQLIQLS YPQETPKRGR 180 WEFDEMVGTP LLLGSCPMFE TGWRQPEREM PEGTIDCELN LSSFNYEKRR GGEETSEMGS 240 SIESDTSEEV LMSKNTSPDY ATACRIPIEK SHLNLELTIS SPNCSVSCSA RKECS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 9e-18 | 26 | 82 | 4 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941616.1 | 0.0 | putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A2H3ZB33 | 1e-116 | A0A2H3ZB33_PHODC; putative Myb family transcription factor At1g14600 | ||||
STRING | XP_008811121.1 | 1e-117 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5493 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-26 | G2-like family protein |