PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941528.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARF
Protein Properties Length: 823aa    MW: 91568.7 Da    PI: 6.2488
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941528.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.3e-23127214183
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  XP_010941528.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELMARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                     99*****************************8544444..49***********************************************7 PP
2Auxin_resp29.33.7e-112092405283
      Auxin_resp  52 edsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     + +  + ++Gt++g+sdldpvrWpnS+Wrs+k
  XP_010941528.1 209 DSVLFIWYMGTITGISDLDPVRWPNSHWRSVK 240
                     55555667*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-41112220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-35120215IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20126215No hitNo description
PROSITE profilePS5086310.969127230IPR003340B3 DNA binding domain
PfamPF023623.3E-21127214IPR003340B3 DNA binding domain
SMARTSM010196.2E-20127227IPR003340B3 DNA binding domain
PfamPF065071.3E-6214240IPR010525Auxin response factor
PfamPF023093.2E-8682775IPR033389AUX/IAA domain
SuperFamilySSF542775.1E-7690765No hitNo description
PROSITE profilePS5174523.246690774IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MRISSSGLAN QPQEEEQRYL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
IDSHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKEP YLPTELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELMAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWYMGTI TGISDLDPVR WPNSHWRSVK  240
VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFHLRLKRP WPTGLPSLHG GKDDDAGLNS  300
PLMWLRDGGN PGIQSLNFQG IGITPWMQPR LDALIHGLQP DMYQSMAAAA LQEMRTLDPA  360
KQVLPAVLPF QQPQNLTSRS TPLLPSQILQ QVQPQSQQTF LHSIQENQVP SQTQSHFLQH  420
QLQQCNSFGE QQQQHQQMQQ QQLPQQQHLL MQQQQQHQQM QQKHLPDHQQ IPNIVSALSH  480
FTSASQSQTP MLQTISSFSQ PQNYPDSNSN SVSTNSTSPL HNIMRPFSPE DISRLSLPRT  540
TPLGTSSPWS CKRIAVESVL PSGAQCVVPH VEQLGATQPN PSPQSVTLPP FPVRECSVDQ  600
DGSTDPQNNL LFGVNIDSSS LLVQNGMPSL RTVASESDSA AMPYGACNFL SPSGTDFPLN  660
QALTSSSCLD ASRFLQSPEN VDQVSHPQSG TFVKVYKAGS FGRSLDITRF SSYHELRSEL  720
GRLFGLEGQL EDPVRSGWQL VFVDRENDVL LVGDDPWQEF VNTVYCIKIL SPQEVQQMGR  780
QGVDLLSSAP IKRLPSNSCD GYVSRQDSRN LSSGVTSVGS LDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-912021451245Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941526.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2H3ZIL80.0A0A2H3ZIL8_PHODC; Auxin response factor
STRINGXP_008776642.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.11e-131auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]