PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941481.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family SBP
Protein Properties Length: 997aa    MW: 109508 Da    PI: 7.5441
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941481.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.13.9e-41147224178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC adls+ k+yhrrhkvCe+h+ka +++v +  qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  XP_010941481.1 147 TCQVEGCGADLSNSKDYHRRHKVCEMHAKAGTAMVGNAIQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNRRRRKTHP 224
                     6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-34140209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.411145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-38146227IPR004333Transcription factor, SBP-box
PfamPF031101.7E-30148221IPR004333Transcription factor, SBP-box
CDDcd002042.44E-10746877No hitNo description
PROSITE profilePS502978.561771839IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.17E-8772877IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-7775888IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.576818839IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MEARIGGESH LLYGSGMSTL NGSGKKNFEW DLNDWKWDSE LFIANPLSAV PSDCRNKQLF  60
PDAANGVLSN SSSSCSGETD FGKGNGEAEK RRRIVVVEED GPYDGSGSLA LKLGGHAYPI  120
TEPDRVNCEG KNGKKSKLQG GNSNHPTCQV EGCGADLSNS KDYHRRHKVC EMHAKAGTAM  180
VGNAIQRFCQ QCSRFHLLQE FDEGKRSCRR RLAGHNRRRR KTHPDVTSNG TSIIDDRSSS  240
YILMSLLRIL SNLHSYSSEQ SKDQDLLSHL LRNLANLAGS FDARNLSGLL QASQDMQKVG  300
ATAGTSSEAA NAPVSNGAPA QESTRPLCLA SKQTCISSTQ GSPLKLTNHM GPVAASMTEM  360
PSKMMASPES AIKRVRLKDF DLNSTYEECG DGCDKSIIPV HLGTGSPNCQ SWLQPDSQQS  420
SPPQTSGNSD STSAQSLSSS NGDAQCRTDR IILKLFGKDP NDLPLVLRAQ ILNWLSHSPT  480
DIESYIRPGC IILTLYLRLA ESAWEEICHD LSSSLNRLLH NSSDNFWRTG WIYTRVQHHV  540
AFIYNGQVVL DTPLLLKCPN NCKILCVTPI AVSSSARVSF TVKGFNLIRS TNRLLCSFEG  600
KYLVQETTQA LVEGTGTGAQ HEGSEHLSFS CSLPDATGRG FIEVEDHGLS NCFFPFIVAE  660
EDVCSEIRML ENAIDLITCN NHDQERTDAN NARNLALDFL NEFGWLLRRN HLKSRSEQIK  720
PCPNAFSVAR FRQLMAFAMD REWCAVVKKL LDILFNGTVD VGGRSPVELA LSEDLLHTAV  780
RKNCKAMVEL LLKYIPDKTS KETGHGRFLF RPDMVGPSGI TPLHVAAASG GADDVLDALT  840
DDPELLGIKA WKSARDSTGF TPEDYAHARG HKSYIGMVQK KIDEQPGKGQ VVLDIPGKSV  900
ARDSDKLSDG PNFGKLSGFE IRMNKMGLAQ QMYCNRCSQQ LAYRNFGSRT LLYRPAMLSM  960
VGIAAVCVCV ALLLKGPPEV FSVFPPFRWE LLRYGTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-30141221484squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18993KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941481.10.0squamosa promoter-binding-like protein 6
SwissprotQ75LH60.0SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBLA0A2H3ZH430.0A0A2H3ZH43_PHODC; squamosa promoter-binding-like protein 6
STRINGXP_008813721.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19983892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]