PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | G2-like | ||||||||
Protein Properties | Length: 420aa MW: 46784.7 Da PI: 4.4575 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 52.9 | 7.9e-17 | 33 | 84 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r++W + L ++F a e L G + A+P++i+++m+++g+t+ +v+SHLQkYRl XP_010941470.1 33 KRRVWDEYLEQKFRVANETL-GRD-AVPSKIMKHMNIEGITRRQVASHLQKYRL 84 799*****************.666.****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-16 | 29 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.218 | 29 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.53E-12 | 31 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.4E-17 | 33 | 85 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MEMEISKSSE AKKGKGGEQI TSKDDENSRK ARKRRVWDEY LEQKFRVANE TLGRDAVPSK 60 IMKHMNIEGI TRRQVASHLQ KYRLKEKNMP FSPSIPDMFG PGTEMAQFKQ VSNQYGLFTT 120 QGCLNCVTLK PSVPVTQMLS FGLQLPLSFN SYPNLTCMQS CNDNSGLHQP KNESQNQLAS 180 HFGMTAEIPS LQSTSTFATN VNNVMGLGGV IPCSFEAAIQ TQQLNTDVQF SSSFRAITQM 240 QQFDCGTRVS ESFREIHQPQ LLNDMDEISD SSCNLVSEYT DAGLVGNNSN DIDATQCKAN 300 EQHTHLVSEN IMTNDACVDG AATNANQFSI TDSEQQHNVS EENTLLVSEY TRNDLTTNGA 360 VINANQSSVN NFEQQYAGSH VVENSKVVEE EDLNHSTEDF ACGDDSWLLM LEDSFEFDFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116195.1 | 0.0 | LOW QUALITY PROTEIN: two-component response regulator ARR1 | ||||
TrEMBL | A0A2H3YXE9 | 0.0 | A0A2H3YXE9_PHODC; two-component response regulator ORR24-like | ||||
STRING | XP_008805335.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50891 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58080.1 | 3e-13 | response regulator 18 |