PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 660aa MW: 71210 Da PI: 6.9483 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.7 | 1.6e-16 | 442 | 488 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k+Lq XP_010941466.1 442 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLEEAIEYLKMLQ 488 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-20 | 436 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.47 | 438 | 487 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.16E-17 | 441 | 492 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-21 | 442 | 497 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-14 | 442 | 488 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-16 | 444 | 493 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 660 aa Download sequence Send to blast |
MPLSEFHRPM TKDKPEATPS RVNNCSSDLF SMPDPDFAEL LWENGQVVMQ GHSSRPKKSS 60 FPTSFSSHAS GVEEKDHRDV DVPKTSRYYA MDPMINDFSP SRPSADVGVN AQDDDMVPWI 120 NYPTEEPLPD DTLQNDYCLE FLNEFMGANL NAHSASSKPM PADRSSGLGQ HAPKALTESK 180 SSEPSRVRTS QLFQMLQHSQ SSAPSSKSGG MDKGIGDGAR TLLQSKNPAG PKPLQLNGSG 240 MLNFSHFSRP AMLAKANLHG VDRPRSNEKL SAPSNSNPVE STLMESTSCF QGAAGVRGRS 300 TSGPHKMELQ SSAKTPQEVI SAEHSQAICQ QDASRKNIPN ILTNNCSRLP DQLASSSIMA 360 SVALRRQETE KAPEAVVASS SVCSANGAGA ASNDPKQQEK RKSREGEESG YQSDDFEDVS 420 VGLKKPAPGR GTSTKRSRAA EVHNLSERRR RDRINEKMRA LQELIPNCNK ADKASMLEEA 480 IEYLKMLQMQ VQIMSMNSGL CMPPMLLPPG MQHMHVPAMA RFLPTGVGMG MGMGLGYGMG 540 MYDMNGSPSC SMIHVPAFHG PQFPCPSIPG PLGLHGMPGS VNHQMFGVPA HGFPLSMPRP 600 SSSGISVKAN SVPEITAPMT CAIPASDAAP ASISEDQQHQ NVETSPRSNT DNSQIQNPNQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 446 | 451 | ERRRRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941465.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X1 | ||||
Refseq | XP_010941466.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 isoform X2 | ||||
TrEMBL | A0A2H3X2B9 | 0.0 | A0A2H3X2B9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1 | ||||
STRING | XP_008777260.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 5e-33 | phytochrome interacting factor 3 |