PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941241.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 665aa    MW: 71763.4 Da    PI: 6.6375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941241.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.9e-13484529454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  Av YI++L
  XP_010941241.1 484 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLADAVSYINEL 529
                     799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-5464245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.225480529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-18481551IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.81E-15483534No hitNo description
PfamPF000102.9E-10484529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-18484550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16486535IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MNIWTDDNSS MMEAFIASSS DLPPFHWPPP ARPSTAATAA HVPSSSSSQS TVTSEAPHLS  60
QENLQHRLQT LIEGARENWT YAIFWQSSGD AVLGWGDGYY KGCEEDKRKR RASGGSAVPA  120
AEQEHRKRVL RELNSLISGG AGGAVPDDMV EDEVTDTEWF FLVSMTQSFV AGAGLPGQAL  180
LSGAPTWVAG GERMVNSPCE RARHAHVFGL QTMACVPVVS GVVELGSTDR IFQSSEIVAK  240
VRTIFRFGGR EAAATGSWPP APPRQSDGET DPSVLWISGP IVPTSTAPEI SVSKPSFPFE  300
NPISSSLAEN PSSIPAPHRS PPPPQSSSTN PQTQSFLTRD FSFSEFGLNA YPSSPICKPE  360
SGDLSNYDDS KRNPSTSAAN GGLFFHHEIS AEAKNKKSAV ATSRGSNDDG LISFSSAALA  420
AAASARPSSS GGGGGATGLL TGDSDHSDLE ASVREVESSR VVEPEKRPRK RGRKPANGRE  480
EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLA DAVSYINELR SKLQSLELDK  540
ERLQGQVDTL KEERDSTLAR PRPPLDRDPK AMMNGSGRCH GVEVEVKILG LEAMIRVQCN  600
KKFHPAARLM MAFKELDLEV NYASVSVVKD LMMQQATVKM LSRSYTQEKL AAALLARVAE  660
PSPLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-61572472194Transcription factor MYC3
4rqw_B7e-61572472194Transcription factor MYC3
4rs9_A7e-61572472194Transcription factor MYC3
4yz6_A7e-61572472194Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1465473KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941241.10.0transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A2H3YJ420.0A0A2H3YJ42_PHODC; transcription factor MYC2-like
STRINGXP_008799392.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-146bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]