PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010941241.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 665aa MW: 71763.4 Da PI: 6.6375 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.5 | 9.9e-13 | 484 | 529 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++L XP_010941241.1 484 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLADAVSYINEL 529 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.4E-54 | 64 | 245 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.225 | 480 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-18 | 481 | 551 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.81E-15 | 483 | 534 | No hit | No description |
Pfam | PF00010 | 2.9E-10 | 484 | 529 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-18 | 484 | 550 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-16 | 486 | 535 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MNIWTDDNSS MMEAFIASSS DLPPFHWPPP ARPSTAATAA HVPSSSSSQS TVTSEAPHLS 60 QENLQHRLQT LIEGARENWT YAIFWQSSGD AVLGWGDGYY KGCEEDKRKR RASGGSAVPA 120 AEQEHRKRVL RELNSLISGG AGGAVPDDMV EDEVTDTEWF FLVSMTQSFV AGAGLPGQAL 180 LSGAPTWVAG GERMVNSPCE RARHAHVFGL QTMACVPVVS GVVELGSTDR IFQSSEIVAK 240 VRTIFRFGGR EAAATGSWPP APPRQSDGET DPSVLWISGP IVPTSTAPEI SVSKPSFPFE 300 NPISSSLAEN PSSIPAPHRS PPPPQSSSTN PQTQSFLTRD FSFSEFGLNA YPSSPICKPE 360 SGDLSNYDDS KRNPSTSAAN GGLFFHHEIS AEAKNKKSAV ATSRGSNDDG LISFSSAALA 420 AAASARPSSS GGGGGATGLL TGDSDHSDLE ASVREVESSR VVEPEKRPRK RGRKPANGRE 480 EPLNHVEAER QRREKLNQRF YALRAVVPNV SKMDKASLLA DAVSYINELR SKLQSLELDK 540 ERLQGQVDTL KEERDSTLAR PRPPLDRDPK AMMNGSGRCH GVEVEVKILG LEAMIRVQCN 600 KKFHPAARLM MAFKELDLEV NYASVSVVKD LMMQQATVKM LSRSYTQEKL AAALLARVAE 660 PSPLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 7e-61 | 57 | 247 | 2 | 194 | Transcription factor MYC3 |
4rqw_B | 7e-61 | 57 | 247 | 2 | 194 | Transcription factor MYC3 |
4rs9_A | 7e-61 | 57 | 247 | 2 | 194 | Transcription factor MYC3 |
4yz6_A | 7e-61 | 57 | 247 | 2 | 194 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 465 | 473 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941241.1 | 0.0 | transcription factor MYC2 | ||||
Swissprot | Q336P5 | 0.0 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | A0A2H3YJ42 | 0.0 | A0A2H3YJ42_PHODC; transcription factor MYC2-like | ||||
STRING | XP_008799392.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-146 | bHLH family protein |
Publications ? help Back to Top | |||
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