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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940929.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bZIP | ||||||||
Protein Properties | Length: 555aa MW: 60141.7 Da PI: 7.1659 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.3 | 1.1e-10 | 401 | 459 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A rs +RK +i+eLe kv++L++e ++L +l l+ + l+s++ XP_010940929.1 401 KRVKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSTGLTSQN 459 899*********************************************99999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 3.7E-19 | 397 | 461 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.795 | 399 | 462 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.4E-11 | 401 | 458 | No hit | No description |
SuperFamily | SSF57959 | 3.09E-11 | 401 | 456 | No hit | No description |
Pfam | PF00170 | 1.6E-9 | 401 | 459 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 1.92E-23 | 402 | 453 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 555 aa Download sequence Send to blast |
MEEAESSRNE WMQRLKLSTG TCSSTLPNLP NIFDLSSFNS SSQARGPHCP LPPSPSFSPE 60 ASKRPGIPPA HPTLPPALPP TPQIPSAAAA AAAPSHSRSL SQPAFFNLDS FASLSPPSSS 120 ADAPMEDRVT ASSPTPAEAP LARSSSGRAS GDGLPPRKAH RRSQSDVPFG FFQSSLPIAG 180 IPPLAPQRAQ GFLERSSSAR EGFGPGRQPP QFVKQENEWE RVGNSRAAGI GGRKPEGDSG 240 DDPVNAYMNL DSLDAMNSLG TEEKREDLDS RASGTKADSS ENESESSVNE SGSSVQFRTP 300 STEKKEGTKR SSPADLSPIN SRHCRSISMD GFMGELHFGD ESPKLPPSLG NQMGQHSRSG 360 SMDGTSSTFS LEFGNGEFSG ADMKKIMVNE KLAEMALTDP KRVKRILANR QSAARSKERK 420 MRYIAELEHK VQTLQTEATT LSAQLTLLQR DSTGLTSQNS ELKFRLQAME QQAQLRDALN 480 EALTAEVQRL KLAAGEITEA HLSKSLNQQM SLNPQLFHLQ QRQSQQQRHQ QSTQIPLFQL 540 QPQQQQHTDA AAKLE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940929.1 | 0.0 | transcription factor VIP1 | ||||
TrEMBL | A0A3Q0I4X9 | 0.0 | A0A3Q0I4X9_PHODC; LOW QUALITY PROTEIN: probable transcription factor PosF21 | ||||
STRING | XP_008776338.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6247 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38900.3 | 2e-90 | bZIP family protein |