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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940895.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19146.3 Da PI: 4.6583 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.5e-17 | 14 | 61 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ g+Wv+eIr+p g + r++lg++ t+e+Aa a++ a+++l+g XP_010940895.1 14 YRGVR--SRYGKWVSEIREP---G-KdSRIWLGTYPTPEMAAMAYDVAALALRG 61 9***5..779*********8...4.34*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.5E-29 | 13 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 13 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.547 | 13 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-19 | 14 | 70 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-10 | 14 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.7E-7 | 14 | 25 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.80E-28 | 14 | 71 | No hit | No description |
PRINTS | PR00367 | 3.7E-7 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MAANPPATGK HQSYRGVRSR YGKWVSEIRE PGKDSRIWLG TYPTPEMAAM AYDVAALALR 60 GSGAVLNFPD AVGRHPALAS TSRTDIRAAA SAAAAAMTVP ATQRPGTSSD ATDRQCWFDG 120 TSSGGDGAKF LDEDEIFDMP QLLRSMAEGM LMTPPSWLSP SQSEDTPETS GEESLWSYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-17 | 7 | 72 | 1 | 66 | ATERF1 |
3gcc_A | 5e-17 | 7 | 72 | 1 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940895.1 | 1e-128 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9FJ90 | 9e-40 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | A0A2H3Z773 | 3e-92 | A0A2H3Z773_PHODC; ethylene-responsive transcription factor ERF027-like | ||||
STRING | XP_008809497.1 | 6e-93 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3654 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 6e-36 | ERF family protein |
Publications ? help Back to Top | |||
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