PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940869.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 358aa    MW: 38849.4 Da    PI: 4.9239
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940869.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-35341242101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+ +++         weF+++ F++g+k+ll++
  XP_010940869.1  34 FLTKTYQLVDDSSVDDIISWNDDGSAFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVSDR---------WEFANDCFRRGEKRLLCD 119
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_010940869.1 120 IHRRK 124
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3727118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.6E-5830123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.71E-3531123IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.6E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1705.4E-4186211No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAPPMAPARE QAGESPPAQQ PPPEGGQRSL PTPFLTKTYQ LVDDSSVDDI ISWNDDGSAF  60
IVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKIVSD RWEFANDCFR RGEKRLLCDI  120
HRRKIIPQAA PAPAPTPVPA VTPITLAAPE NWAGSPTNSG EEQVLSSNSS PGALPAPATV  180
AGGAVELRDE NERLRKENSR LSRELSQMKN LCNNIVLLMS KYASSQQQGG GGVEGGEQAA  240
PEVAPPLLEL IPARRAEEEE EEEEGRVKAE EVTSPPSPAG PCARLFGVSI GVKRLRGEDG  300
GEDPPDRASA PEVKPEPLDP GSGPDRESWI LRCPRPSQRA CNGSDRVAGG ERERGHVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-253412329129Heat shock factor protein 1
5d5v_B8e-253412329129Heat shock factor protein 1
5d5v_D8e-253412329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940869.10.0heat stress transcription factor B-2b
SwissprotQ6Z9C82e-99HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A2H3YSM50.0A0A2H3YSM5_PHODC; heat stress transcription factor B-2c-like
STRINGXP_008803040.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-62heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]