PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940774.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 438aa    MW: 47763.8 Da    PI: 6.366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940774.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.63.5e-16221267455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn +E+rRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  XP_010940774.1 221 VHNLAEQRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 267
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-19215276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.777217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-16220271No hitNo description
PfamPF000101.1E-13221267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-20221274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-17223272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MSDHYYCVGD FDLHDDDHHL RHRIPALFGD DVPELMPQKG SVAHPVRGRV WKRSPPEQPA  60
ADAGDIGSAA VEAAARHPLV EEDEMTAWLD YQIGDGGGDL YRELLATGAG DSGDIRADRG  120
HALAVQKQGV GVSRESRVVE SSEMLADGQA VRRGPAKAHV RDGRKRKARE GDDSECREDN  180
EVDRPGNLLP YTEDAAFESG DKRKDTHRSA ASMKRSRAAE VHNLAEQRRR DRINEKMKAL  240
QELIPRCNKS DKASMLDEAI EYLKSLQLQV QMMSVGCNTG PVKIFPGVQT YLPHIGMGMG  300
IGMGLGTGPA MTMGREIGAG GLGLPGLRYG SFFPCFPLAG PAPAQFAPRP MVPSFRSPNM  360
GMAMADQTRV QAPWQQNPSS NLVSMHSTNI AQIPHVGDPY CHFIGLDHLN GSSQDAEVAL  420
QQNAPLLFWG IAVLHDDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029124465.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBLA0A2H3XVY40.0A0A2H3XVY4_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
STRINGXP_008789575.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2499145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-32phytochrome interacting factor 3-like 5