PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940742.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 503aa MW: 57426.5 Da PI: 6.9318

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940742.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182	1.5e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v+ XP_010940742.1 6 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKLGYWKATGKDRKVT 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kktLv+y+grap+g++t+Wvmheyrl XP_010940742.1 100 L-QKRTVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 133 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.205	6	156	IPR003441	NAC domain
Pfam	PF02365	3.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MAPIGLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKLGYWK ATGKDRKVTL QKRTVGMKKT LVYYRGRAPH 120 GSRTNWVMHE YRLDEKECET NSGLQDAYSL CRVFKKSMLG PKIIDRYNAS HEEHSQRMLS 180 DNTLTTDALA DGGEGRESYG YLYPLETCSS NRPQGALCDA NTPITDKWVQ LLADEAFIST 240 PMLFDNPLKN CYIQSKVDVA LECAKLQHRL SLPPLELEDF PQIDLLNTKA LECGFIEGNT 300 SEVDALQEIL SVASASQELI NNPNYPYAWT KVSPYFMKPI DEQKIDGSTR LCQMESVGEQ 360 ASLRDISELE EELMEEKKTV ENLRKITMSM SDTVKGDTNH GYFVSSGSMT ETLFHHVESL 420 EKVSIHWNPI AKLDSRVREF GFSMKDRGRV SVFVTFKAIL GDKLKRLMIS MKKCRRSCLD 480 DEAVDAFINM SHFKGRSLQV SNA

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MAPIGLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKLGYWK ATGKDRKVTL QKRTVGMKKT LVYYRGRAPH  120
GSRTNWVMHE YRLDEKECET NSGLQDAYSL CRVFKKSMLG PKIIDRYNAS HEEHSQRMLS  180
DNTLTTDALA DGGEGRESYG YLYPLETCSS NRPQGALCDA NTPITDKWVQ LLADEAFIST  240
PMLFDNPLKN CYIQSKVDVA LECAKLQHRL SLPPLELEDF PQIDLLNTKA LECGFIEGNT  300
SEVDALQEIL SVASASQELI NNPNYPYAWT KVSPYFMKPI DEQKIDGSTR LCQMESVGEQ  360
ASLRDISELE EELMEEKKTV ENLRKITMSM SDTVKGDTNH GYFVSSGSMT ETLFHHVESL  420
EKVSIHWNPI AKLDSRVREF GFSMKDRGRV SVFVTFKAIL GDKLKRLMIS MKKCRRSCLD  480
DEAVDAFINM SHFKGRSLQV SNA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-57	1	156	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-57	1	156	15	168	NAC domain-containing protein 19
3swm_B	6e-57	1	156	15	168	NAC domain-containing protein 19
3swm_C	6e-57	1	156	15	168	NAC domain-containing protein 19
3swm_D	6e-57	1	156	15	168	NAC domain-containing protein 19
3swp_A	6e-57	1	156	15	168	NAC domain-containing protein 19
3swp_B	6e-57	1	156	15	168	NAC domain-containing protein 19
3swp_C	6e-57	1	156	15	168	NAC domain-containing protein 19
3swp_D	6e-57	1	156	15	168	NAC domain-containing protein 19
4dul_A	5e-57	1	156	12	165	NAC domain-containing protein 19
4dul_B	5e-57	1	156	12	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029124457.1	0.0	NAC domain-containing protein 86-like
TrEMBL	A0A3Q0IGZ0	0.0	A0A3Q0IGZ0_PHODC; NAC domain-containing protein 45-like
STRING	XP_008813657.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-114	NAC domain containing protein 28