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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ERF | ||||||||
Protein Properties | Length: 124aa MW: 13929.5 Da PI: 8.4512 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.3e-20 | 15 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+++AeIrd + +r++lg+f taeeAa+a+++a+ +++g XP_010940608.1 15 TKYRGVRRRP-WGKYAAEIRD----SarQGARIWLGTFNTAEEAARAYDRAAYAMRG 66 69********.**********....33334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.4E-15 | 15 | 66 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.22E-20 | 15 | 75 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-24 | 16 | 76 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-36 | 16 | 80 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 16 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-32 | 16 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-12 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-12 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 124 aa Download sequence Send to blast |
MEEDPSKGDG GNGETKYRGV RRRPWGKYAA EIRDSARQGA RIWLGTFNTA EEAARAYDRA 60 AYAMRGSLAV LNFPDEVPSR RTGSASTSWS MAREQGNQVI EFECLDDKVL EDMLEHGEKR 120 GKKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-32 | 16 | 124 | 14 | 131 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940608.1 | 1e-87 | ethylene-responsive transcription factor 14 | ||||
Swissprot | Q9LTC5 | 8e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A3Q0HTE9 | 5e-66 | A0A3Q0HTE9_PHODC; ethylene-responsive transcription factor 14-like | ||||
STRING | XP_008780729.1 | 8e-67 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 4e-30 | Ethylene-responsive element binding factor 14 |
Publications ? help Back to Top | |||
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