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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940507.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | HSF | ||||||||
Protein Properties | Length: 573aa MW: 63418.2 Da PI: 5.1688 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.2 | 7.5e-35 | 106 | 198 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+ye+++d++l+ lisw ++g+sfvv+d+ efa+ vLp+ Fkhsnf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k ll++ XP_010940507.1 106 FLSKTYELVDDPSLDPLISWGSTGRSFVVWDPVEFARAVLPRNFKHSNFSSFVRQLNTYGFHKIDADR---------WEFANEDFLRGNKPLLKN 191 9****************************************************************999.........****************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 i+r++s+ XP_010940507.1 192 INRRRSS 198 ****987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.2E-56 | 102 | 195 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.61E-35 | 102 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 1.6E-36 | 103 | 195 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.4E-17 | 106 | 129 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.8E-30 | 106 | 195 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-17 | 144 | 156 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 145 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-17 | 157 | 169 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MEPARDKPPR LPTRSSSALM GTTMPRRPFE GGSGFPLSSS SSSSSPFMEF GAPSASKSRP 60 SSSVEPKIEQ ASSPVGEKLP SSSSSSPGVA APRPLEALQS APIPPFLSKT YELVDDPSLD 120 PLISWGSTGR SFVVWDPVEF ARAVLPRNFK HSNFSSFVRQ LNTYGFHKID ADRWEFANED 180 FLRGNKPLLK NINRRRSSQV QQVGSQVGFS AENAKPELEG ELHMLRKEKS ALMQEAITLR 240 QEHLMTVQQV DALNQRMQLA EQRQKLMVSF LAKVLQHPVL LAHLKQLKEQ REIASTIRRK 300 FLKQQQHSHS DLDKSMDQQT GKKRLEFTGA TSSGLQGIEC SVSKQLPNNL LQDMVEKPDL 360 DTSRGELLIG SVETGLEVLD PLFLDPDSVA IKVGLPESSH TDMGFSGTEF FASFPEDTTP 420 ERMFSDAIIP ATEFARPDPK TVSFEGKNVV DKTEVTSAGG KCLISFAEDT SQEKMFSDAI 480 ASARKTSSGP EEIWNLCLEA GESSWSSRHW DSLAQDAIEL EAGARPDALW DIDLQALDED 540 LEFDKCLGSY FCHQERENQA GAANKDHKEK MEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-23 | 103 | 198 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 2e-23 | 86 | 195 | 17 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 86 | 195 | 17 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 86 | 195 | 17 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940507.1 | 0.0 | heat stress transcription factor A-3-like | ||||
TrEMBL | A0A2H4A181 | 0.0 | A0A2H4A181_PHODC; heat stress transcription factor A-3-like isoform X1 | ||||
STRING | XP_008775120.1 | 0.0 | (Phoenix dactylifera) | ||||
STRING | XP_008807524.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9010 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 1e-77 | heat shock transcription factor A3 |