PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 598aa MW: 63292.8 Da PI: 8.8455

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940267.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H XP_010940267.1 78 FICEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	12.5	0.00046	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ XP_010940267.1 154 WKCDKCSKRYAVQSDWKAHSKTC 176 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.8E-7	77	100	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.7E-6	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0052	78	100	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	2.9E-5	78	100	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.99	78	100	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.0E-4	142	175	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.8E-7	149	174	No hit	No description
SMART	SM00355	140	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MAAASSSAPF FGIREEEHHN QQHHLQQQQS SSTPASSAPA AAQPPAPQKK KRNLPGNPNP 60 DAEVIALSPK TLLATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLRQKN PKEQRRRVYL 120 CPEPTCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE 180 YRCDCGTLFS RRDSFITHRA FCDALAQESA RIPTGLSSIG SHLYGNSGMS LGLSQVNSQL 240 SSLQDQNHPS ADLLRLGGSG GGAQFDHLNP SSFRQPQPPH SSAFFLGGGS SQGFNDDPQS 300 THPLLQSKPF HGLMQLPDLQ ANSNNASSSS PAAAATAANL FNLSFFSNGG STSTMNNNNN 360 NTGNQNTNLL IPDHFNNGNG STEPTTLFSG NLVNDHIGSG IPSMYNTSMH NESSVPQMSA 420 TALLQKAAQM GATTSGGGGS SLLRGFGSSF FSGSKTAGFH ATFSGGGGGG CGGGGGGGGG 480 ESSRSQVENE NHFQDLMNSL ANGNTGIFSG GHEQQTGFGG FNPGLCNMDD GKLHQSLPPG 540 GIGGSDRLTR DFLGVNSMVR SMGGGISPRE QHLGIDIGSL NSEMKSGSST RSFGGGNL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MAAASSSAPF FGIREEEHHN QQHHLQQQQS SSTPASSAPA AAQPPAPQKK KRNLPGNPNP  60
DAEVIALSPK TLLATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLRQKN PKEQRRRVYL  120
CPEPTCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE  180
YRCDCGTLFS RRDSFITHRA FCDALAQESA RIPTGLSSIG SHLYGNSGMS LGLSQVNSQL  240
SSLQDQNHPS ADLLRLGGSG GGAQFDHLNP SSFRQPQPPH SSAFFLGGGS SQGFNDDPQS  300
THPLLQSKPF HGLMQLPDLQ ANSNNASSSS PAAAATAANL FNLSFFSNGG STSTMNNNNN  360
NTGNQNTNLL IPDHFNNGNG STEPTTLFSG NLVNDHIGSG IPSMYNTSMH NESSVPQMSA  420
TALLQKAAQM GATTSGGGGS SLLRGFGSSF FSGSKTAGFH ATFSGGGGGG CGGGGGGGGG  480
ESSRSQVENE NHFQDLMNSL ANGNTGIFSG GHEQQTGFGG FNPGLCNMDD GKLHQSLPPG  540
GIGGSDRLTR DFLGVNSMVR SMGGGISPRE QHLGIDIGSL NSEMKSGSST RSFGGGNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	150	214	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-34	150	214	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940267.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_010940268.1	0.0	protein indeterminate-domain 5, chloroplastic
Refseq	XP_019711015.1	0.0	protein indeterminate-domain 5, chloroplastic
Swissprot	Q9ZUL3	1e-135	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A2H3ZFR2	0.0	A0A2H3ZFR2_PHODC; protein indeterminate-domain 5, chloroplastic-like
STRING	XP_008812809.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1733	37	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-116	indeterminate(ID)-domain 4

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]