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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_010940212.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family |
YABBY |
| Protein Properties |
Length: 192aa MW: 21142.7 Da PI: 5.1505 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010940212.1 | genome | OG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 176.5 | 1.7e-54 | 8 | 161 | 4 | 167 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98
+ +eq+ yvqC+fC+t+l+vsvP +sl+kvvtvrCGhC+ llsv+l + + + +l ++ ++++++ee + + ++ +
XP_010940212.1 8 LELPEQLGYVQCSFCTTVLLVSVPCSSLLKVVTVRCGHCAGLLSVSLVRTDFV-PL------QLLGSIGNDEEKHEECTV----DDPPGRACEDG 91
6789****************************************998765533.22......223334444443333332....22222222222 PP
YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
++ne+++ p + p v++PPekrqr+Psaynrfikeeiqrika+ P+i+hreafs+aaknWahfP++
XP_010940212.1 92 DDEEDNEKKSPPDQTPvVNKPPEKRQRAPSAYNRFIKEEIQRIKAKEPNITHREAFSTAAKNWAHFPRVQ 161
222345555555444449*************************************************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 192 aa
Download sequence Send
to blast |
MSTDNSFLEL PEQLGYVQCS FCTTVLLVSV PCSSLLKVVT VRCGHCAGLL SVSLVRTDFV 60
PLQLLGSIGN DEEKHEECTV DDPPGRACED GDDEEDNEKK SPPDQTPVVN KPPEKRQRAP 120
SAYNRFIKEE IQRIKAKEPN ITHREAFSTA AKNWAHFPRV QAKGHGESCS TGEGENDGEM 180
DGRSQGICKK KP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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