PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940203.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 313aa    MW: 34098.7 Da    PI: 6.1041
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940203.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.1e-10225268755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  XP_010940203.1 225 IAAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 268
                     5679*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-12219276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.19E-12220272No hitNo description
SuperFamilySSF474591.31E-13220278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-12224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-7226268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALAKERTLE GLQTRSPYGN VHGGGRSIPG LDPSSVHVSS YEGHNSNVVL EDGQGSESLE  60
SYSRGLVPLL SDPSNSPSGS FVFGPVDSSL QEAHSVVNFK AASDHWAYSG SSVLSFDQQG  120
DTVLCTDYQN IDQEDECAIW MDAMGQNYQL NQRMTNAINN DYRHGKELPD LGVAAGDGLQ  180
ESVEQEKSNQ KRTYTGGDLQ ASKKHCGNTR KTKAKPVPSK DPQSIAAKNR RERISERLKI  240
LQDLVPNGSK VDLVTMLEKA ISYVKFLQLQ VKVLATDEFW PAQGGKAADV SQVKEAIDAI  300
LSSHRSRNSS SNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940203.20.0putative transcription factor bHLH086, partial
TrEMBLA0A3Q0HUV81e-138A0A3Q0HUV8_PHODC; putative transcription factor bHLH086
STRINGXP_008787978.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.11e-55ROOT HAIR DEFECTIVE6