PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940117.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 152aa MW: 16778.1 Da PI: 10.2521 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 44 | 82 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010940117.1 44 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 82 7788999*********998.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.719 | 32 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-11 | 42 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.55E-6 | 42 | 86 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.1E-10 | 46 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MPPLVSGVAE AKRGNSILEH RASHTAPKKP RFESRSSFSP FKVRKEKLGD RIAALQQLVA 60 PFGKTDTASV LMEAIGYIKF LQHQVETLSV PYMKSSNNKK SRTTQAVPDE DRDESKLDLR 120 SRGLCLVPLS CTSYVTSDNG GVWSPPNYRG NA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940117.1 | 1e-110 | transcription factor bHLH110 | ||||
Swissprot | Q9SFZ3 | 8e-52 | BH110_ARATH; Transcription factor bHLH110 | ||||
TrEMBL | A0A2H3YAU9 | 4e-93 | A0A2H3YAU9_PHODC; transcription factor bHLH110 | ||||
STRING | XP_008795968.1 | 7e-94 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7240 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 2e-43 | bHLH family protein |
Publications ? help Back to Top | |||
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