PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010940117.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 152aa MW: 16778.1 Da PI: 10.2521

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010940117.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	44	82	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_010940117.1 44 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 82 7788999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.719	32	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-11	42	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.55E-6	42	86	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.1E-10	46	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MPPLVSGVAE AKRGNSILEH RASHTAPKKP RFESRSSFSP FKVRKEKLGD RIAALQQLVA 60 PFGKTDTASV LMEAIGYIKF LQHQVETLSV PYMKSSNNKK SRTTQAVPDE DRDESKLDLR 120 SRGLCLVPLS CTSYVTSDNG GVWSPPNYRG NA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010940117.1	1e-110	transcription factor bHLH110
Swissprot	Q9SFZ3	8e-52	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A2H3YAU9	4e-93	A0A2H3YAU9_PHODC; transcription factor bHLH110
STRING	XP_008795968.1	7e-94	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7240	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-43	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]