PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010940086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 334aa MW: 37217.8 Da PI: 7.4999 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.4e-10 | 145 | 192 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq XP_010940086.1 145 SHSLAERVRRERISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 192 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.06E-17 | 139 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.50E-10 | 139 | 196 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.9E-17 | 141 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.605 | 141 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-7 | 145 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-9 | 147 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MDDYVCNAGD LVPLPTSMQS LNNSNDHDTS GTASYIHDQI GIHDTRPPII SSIANDAGKE 60 TSTKNSRKRK VENISNQKVG CGNTTKDGTK DKRMKEGTER GGATEESQKA NSKKEASGDA 120 SKRSMKPAKS ECIHVRARRG QATDSHSLAE RVRRERISER MKYLQDLVPG CNKITGKAGM 180 LDEIINYVQS LQRQVEFLSM KLAAVNPRLD FHIDNFFDRE IDLACNPGVM PMFDMPSKQW 240 NPYIQFNSLH PTTACCGFDV DMCSSDRILG RTMSMSMPAL LPDTILDSSL NVHRSSSYPS 300 SWDIAGLHNI YGVEFYQGRR PDLPFQSLQG DNFP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010940086.1 | 0.0 | transcription factor bHLH63 isoform X1 | ||||
TrEMBL | A0A2H3YAS2 | 1e-167 | A0A2H3YAS2_PHODC; transcription factor BHLH094-like | ||||
STRING | XP_008795935.1 | 1e-168 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8252 | 37 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 4e-54 | cryptochrome-interacting basic-helix-loop-helix 1 |