PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010940074.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ZF-HD
Protein Properties Length: 302aa    MW: 33066.9 Da    PI: 7.9278
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010940074.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.31.6e-2790137355
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRr 55 
                     +vrY+eCl+NhAa+lGgh++DGC+Efmps     + +a+kCaACgCHR+FHR 
  XP_010940074.1  90 AVRYRECLRNHAATLGGHVLDGCCEFMPS-----SEDAFKCAACGCHRSFHRI 137
                     69**************************9.....568***************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.65E-62229No hitNo description
PfamPF047702.9E-2391136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1691141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-2292136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.08193138IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-29226292IPR009057Homeodomain-like
SuperFamilySSF466892.03E-19226291IPR009057Homeodomain-like
PROSITE profilePS500718.535228292IPR001356Homeobox domain
TIGRFAMsTIGR015652.1E-28230286IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDFTRQDEEE DSDNPPLPPP PPPPPPPPPP PPPSIRESAL GRPMLSPSSS LLSPRGAGAG  60
AGGGARNEMR PLSPNPTAST RGTDSSSAGA VRYRECLRNH AATLGGHVLD GCCEFMPSSE  120
DAFKCAACGC HRSFHRIDGD SPPSHSNPNS LYHLHDPPHG RSPFLLPPLH PHHPTSHHHH  180
QKQFISPAIL ELRGSNSTGG GAGGGPMTES SSEERNAGAG PLQRPYMVSK KRFRTKFTTE  240
QKERMLDFAE RLGWRIQKQD EALVDEFCAE VGVSRQVLKV WIHNNKHSVR KQQQQQQEHQ  300
HM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-272292881675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010940074.10.0zinc-finger homeodomain protein 6
TrEMBLA0A2H3YAR71e-124A0A2H3YAR7_PHODC; zinc-finger homeodomain protein 6-like
STRINGXP_008795929.11e-118(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-52homeobox protein 22