PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_010939990.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 230aa MW: 25225 Da PI: 6.6241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939990.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_010939990.1 87 FSCNYCQRKFFSSQALGGHQNAH 109 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.82E-6	84	114	No hit	No description
PROSITE profile	PS50157	11.344	87	114	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MNTSNHIEAS EDVSEVSSQV ASNISLQQSF PCHNEEGVPI SLQPTSLDLS LTVKLDSSSP 60 AVISLSSTSE SSSDTRACNA PNPRRVFSCN YCQRKFFSSQ ALGGHQNAHK RERTLAKRAL 120 RMDAFPYAYG SIASLPLNGS VFHSLGIKAH SSVHRGMVNE RQESRSSPRF ARGLLGPMPD 180 FAEDDEVNFY WPGSFRPSTN SGFELMGNPN LNRSTSDPLT VEELDLTLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939989.1	1e-169	zinc finger protein 4
Refseq	XP_010939990.1	1e-169	zinc finger protein 4
Refseq	XP_010939991.1	1e-169	zinc finger protein 4
Refseq	XP_010939992.1	1e-169	zinc finger protein 4
Refseq	XP_029124348.1	1e-169	zinc finger protein 4
Refseq	XP_029124349.1	1e-169	zinc finger protein 4
Swissprot	Q39263	4e-38	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2H3XS29	1e-128	A0A2H3XS29_PHODC; zinc finger protein 4-like
STRING	XP_008787905.1	1e-129	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	4e-40	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]