 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010939970.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 272aa MW: 29994.4 Da PI: 10.0983 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010939970.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 318.4 | 2.2e-97 | 1 | 272 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..maflqrdkalaernkalverdnkllalllvenslas 93
mdddg rn+gyy++ lk nlglqlmss++erd+k+ +n + +++ + e ++f rd ++++ +rdnk+l++l++++
XP_010939970.1 1 MDDDGLGIRNWGYYDQP--LKGNLGLQLMSSVPERDTKPLLSNGGFLHRDCGIPEPSvpVDF-VRDGWIHH------NRDNKILHMLPMNHH--- 83
9***9999********9..********************99999888887777655555899.9******9......9**********7774... PP
GAGA_bind 94 alpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesadersk 188
+++++l++ s+++lq+ l+++ + r+ + + + + +++++ kkr++++ k++k kk+kk e+++ +v+ + k
XP_010939970.1 84 --QPNYGMLPDPPSTHTLQM-----LQPPEPP-RD-----DKVLMMEDPGGRNETSLKKRSQGRPHKSPKPKKPKKVAEATNGSVS------HGK 159
..56799*********9999.....6665555.22.....2222333455556666777899999999*******97766644443......457 PP
GAGA_bind 189 aekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
a kks++lv+ng++lD+s++P+PvCsCtG+++qCY+WG GGWqSaCCtt+iS yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eG++lsnp+
XP_010939970.1 160 AGKKSTGLVINGIDLDISGIPTPVCSCTGTPQQCYRWGVGGWQSACCTTSISCYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGHNLSNPI 254
89********************************************************************************************* PP
GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
DL++ WAkHGtnkfvtir
XP_010939970.1 255 DLRTLWAKHGTNKFVTIR 272
*****************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 272 aa
Download sequence Send
to blast |
MDDDGLGIRN WGYYDQPLKG NLGLQLMSSV PERDTKPLLS NGGFLHRDCG IPEPSVPVDF 60
VRDGWIHHNR DNKILHMLPM NHHQPNYGML PDPPSTHTLQ MLQPPEPPRD DKVLMMEDPG 120
GRNETSLKKR SQGRPHKSPK PKKPKKVAEA TNGSVSHGKA GKKSTGLVIN GIDLDISGIP 180
TPVCSCTGTP QQCYRWGVGG WQSACCTTSI SCYPLPMSTK RRGARIAGRK MSQGAFKKVL 240
EKLAGEGHNL SNPIDLRTLW AKHGTNKFVT IR
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
