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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_010939969.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family |
C2H2 |
| Protein Properties |
Length: 434aa MW: 47986.4 Da PI: 9.3187 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010939969.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 18.6 | 5e-06 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C++C++ F r nL+ H r+H
XP_010939969.1 63 YVCEICNQGFQRDQNLQMHRRRH 85
9*********************9 PP
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| 2 | zf-C2H2 | 14.7 | 8.7e-05 | 140 | 162 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C C+k + +s++k H++t+
XP_010939969.1 140 WVCARCSKAYAVQSDYKAHLKTC 162
58*******************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MLGSTMPAAP ALPSDNNIMT SSSFPCLENG TNSKRKRRPA GTPDPDAEVV SLSPRTLLES 60
DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK LLKRDAAEVR KRVFVCPEPS CLHHDPCHAL 120
GDLVGIKKHF RRKHSSHKQW VCARCSKAYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES 180
FIEHQDACNA GRARADLHQT PPRACRSRAA SSPSPSSDTN FSSGAPAWPS LRTPASTSAF 240
QPPPPSDHRR PHSLELQLLL PASNPHPMTT TVTSPTLSPA SDEAHATKLQ LSIGPSGSKR 300
APVNGELTSA IHDKDQEKLR RAMTEKALAD EGRLQARRQV ELAEMEFADA KRIRQQAMAE 360
LENACVIRDN TMKRINSILL QITCHACRQP FRANSVMPAD ESSLAVVSFV SSVVTEGEGD 420
ENSNPRYPVK IFKT
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kim JY,Ryu JY,Baek K,Park CM
High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
New Phytol., 2016. 209(1): p. 265-79
[PMID:26256266] - Ryu JY,Kim JY,Park CM
Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
Plant Signal Behav, 2015. 10(11): p. e1093715
[PMID:26452406] - Qu Y, et al.
Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
J. Exp. Bot., 2017. 68(17): p. 4851-4867
[PMID:28992128] - Shi H, et al.
Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
J. Pineal Res., 2018. 65(2): p. e12494
[PMID:29607541]
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