PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_010939810.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 256aa MW: 28055.2 Da PI: 4.9352

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939810.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	40.7	5.4e-13	17	44	1	28
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAt 28 kprl+Wt++LH+rFv+av+qLGG+++ + XP_010939810.1 17 KPRLKWTQQLHQRFVDAVSQLGGADNCV 44 79**********************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-11	15	45	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-7	17	42	IPR006447	Myb domain, plants
Pfam	PF14379	3.6E-19	72	113	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MPNQGENRGL VLSVDAKPRL KWTQQLHQRF VDAVSQLGGA DNCVAASNLT IDNEASQIDQ 60 EKTPARLNET MVQMQIEVQR KLQEQIEVQR HLQLRIEAQG KYLQSVLRKA QETLAGYSSN 120 SLGMEAAKAE LSELVSAVET ECLSSSFSQG SLIPKRAEHA DCSTDSCLTS SLERQEAKVG 180 KQHKLEHSSS LDNWSEGSDE INPNGMKAME TQVNDMLGME KGSCSSIHGE ANVEQPTSGK 240 QETSGFGVPR GLDLNR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939806.1	0.0	myb family transcription factor PHL8 isoform X1
Swissprot	Q9SQQ9	5e-42	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A2H3YR44	1e-155	A0A2H3YR44_PHODC; myb-related protein 2-like isoform X4
STRING	XP_008802581.1	1e-156	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.2	2e-44	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]