PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010939706.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 327aa MW: 36231.9 Da PI: 6.9173

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939706.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.1e-14	121	172	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++Y+k+L+ XP_010939706.1 121 QRMTHIAVERNRRKQMNEYLSSIRSLMPPS---YVQRGDQASIIGGAINYVKELE 172 79**************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.3E-13	119	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.35E-13	119	176	No hit	No description
SuperFamily	SSF47459	7.07E-17	120	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.485	120	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-11	121	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.4E-10	126	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MALDAAVFPQ DPFGCTMKEF YTLGGVWNYG FGGLEGKGVV VECKMDGGVG GGVRQEQGKG 60 VVDGVHGNWD SSCSSLVQNL EEWDVNSSPP SETGGRETAM RGRRKRRRTK SFKNKEEVEN 120 QRMTHIAVER NRRKQMNEYL SSIRSLMPPS YVQRGDQASI IGGAINYVKE LEQLLQSLEV 180 QKRLKQRSDT VPFADFFTFP QYSSCSSQSA NGAATTTTAA AAINTNATEI MAENRSAIAD 240 IEVMMVDSHA NLKVLSRRRP KQLLKLVVGL QNLQLTTLHL NVTTMDEMVL YSFSLKVEDD 300 CQYTSVDEIA TAVYQMVGKI QQSSDLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	107	RKRRR
2	103	108	RKRRRT
3	121	132	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939706.1	0.0	transcription factor bHLH94
TrEMBL	A0A2H3X1M1	1e-146	A0A2H3X1M1_PHODC; transcription factor bHLH96-like
STRING	XP_008776945.1	1e-170	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP741	38	156

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-58	bHLH family protein