PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36231.9 Da PI: 6.9173 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43 | 8.1e-14 | 121 | 172 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +r+l+P++ + ++ + a+i A++Y+k+L+ XP_010939706.1 121 QRMTHIAVERNRRKQMNEYLSSIRSLMPPS---YVQRGDQASIIGGAINYVKELE 172 79****************************...9******************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-13 | 119 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.35E-13 | 119 | 176 | No hit | No description |
SuperFamily | SSF47459 | 7.07E-17 | 120 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 120 | 171 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.7E-11 | 121 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.4E-10 | 126 | 177 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MALDAAVFPQ DPFGCTMKEF YTLGGVWNYG FGGLEGKGVV VECKMDGGVG GGVRQEQGKG 60 VVDGVHGNWD SSCSSLVQNL EEWDVNSSPP SETGGRETAM RGRRKRRRTK SFKNKEEVEN 120 QRMTHIAVER NRRKQMNEYL SSIRSLMPPS YVQRGDQASI IGGAINYVKE LEQLLQSLEV 180 QKRLKQRSDT VPFADFFTFP QYSSCSSQSA NGAATTTTAA AAINTNATEI MAENRSAIAD 240 IEVMMVDSHA NLKVLSRRRP KQLLKLVVGL QNLQLTTLHL NVTTMDEMVL YSFSLKVEDD 300 CQYTSVDEIA TAVYQMVGKI QQSSDLN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 103 | 107 | RKRRR |
2 | 103 | 108 | RKRRRT |
3 | 121 | 132 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939706.1 | 0.0 | transcription factor bHLH94 | ||||
TrEMBL | A0A2H3X1M1 | 1e-146 | A0A2H3X1M1_PHODC; transcription factor bHLH96-like | ||||
STRING | XP_008776945.1 | 1e-170 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP741 | 38 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 4e-58 | bHLH family protein |