PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | C2H2 | ||||||||
Protein Properties | Length: 363aa MW: 39477.4 Da PI: 6.7091 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.8 | 2.3e-07 | 158 | 179 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H XP_010939660.1 158 FCEICGKGFKRDANLRMHMRAH 179 6*******************99 PP | |||||||
2 | zf-C2H2 | 13.7 | 0.00018 | 248 | 271 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs + +Lk+H++ + XP_010939660.1 248 YSCHRCNkKSFSVPADLKNHLKHC 271 99*******************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.75E-6 | 154 | 180 | No hit | No description |
SMART | SM00355 | 0.0015 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 157 | 179 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.718 | 157 | 184 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12874 | 0.002 | 158 | 177 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 160 | 210 | 243 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 13 | 248 | 270 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MIGSGCRNPG QTSAGIDPSS AARDGDSRPA PMARSDPRLP LLNLSVLGQK MESLSRVLSD 60 SIGRRAPLDD DQLQLVSAEI ASAVHQTILN GAALLACSHP VDLAPTSAID PAAGKLADQI 120 GSDPDPSSSA PDDGDAAEED GDIVEIDVAE LLAEHIHFCE ICGKGFKRDA NLRMHMRAHG 180 NRFKTLEALS KPPDRDRHQP DDGGGRKLRF SCPSVGCNRN RHHSRFRPLK SAVCVKNHFK 240 RSHCPKMYSC HRCNKKSFSV PADLKNHLKH CGESRWRCSC GTSFSRKDKL FGHVALFEGH 300 LPAVGTEEEE EEKGKEKELV AGGGEDIGRG GDEPVGEEGL DPEFFRRLMK ELEGMEGVNW 360 PAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939660.1 | 0.0 | protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | A0A2H3XYY5 | 0.0 | A0A2H3XYY5_PHODC; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | XP_008790878.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12550 | 32 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 2e-66 | C2H2 family protein |