PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010939468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 389aa MW: 43644.5 Da PI: 6.7461 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.8e-10 | 215 | 262 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ + f L ++P + kK +Ka+ + A++Y+k+L+ XP_010939468.1 215 QDHVMAERKRREKLGQQFIALSAIIPDL-----KKTDKASLVGGAINYLKQLE 262 5699************************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.814 | 212 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.51E-14 | 216 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-7 | 216 | 262 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-14 | 216 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.23E-9 | 217 | 266 | No hit | No description |
SMART | SM00353 | 3.3E-11 | 218 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.719 | 319 | 389 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 389 aa Download sequence Send to blast |
MRSAFRKQKV HVIEVEDQDF GQEGVRKPSS WQWWGKRNRS VHIGAFTWVN STLPYEEGEE 60 KDVPHALKEE KLLQVRLKKD EYSTFIFPSE MTSLDHFDAQ EIIRSLGEDF EYPSCFSSFD 120 SPGNTELNAP MNCSSMEVSE GPIDVNKADG VPGAVPNASS ISLISFGHPE PVHDPLGLWP 180 RNESFYCSHG STSNEKTLDF RRPERNRMMS RSTSQDHVMA ERKRREKLGQ QFIALSAIIP 240 DLKKTDKASL VGGAINYLKQ LEEKVKTLEE QAVKKNTRPI VFVKKSHLST NNAISNADGS 300 SPDKAIQKVE ASLEGKTILM RIHCEKKKGI LVKVLSEIEK LHLSVINTGV VPFTDSSLNI 360 TVTAQIEEGF SMTVQDLVKE LNSALSQLL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_B | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_E | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_F | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_G | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_I | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_M | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
5gnj_N | 9e-13 | 209 | 265 | 1 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 220 | 225 | ERKRRE |
2 | 221 | 226 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019710695.1 | 0.0 | transcription factor bHLH18-like | ||||
Refseq | XP_029124409.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A3Q0HXN6 | 1e-147 | A0A3Q0HXN6_PHODC; transcription factor bHLH18-like | ||||
STRING | XP_008785755.1 | 1e-154 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 8e-45 | bHLH family protein |