PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939468.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 389aa    MW: 43644.5 Da    PI: 6.7461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939468.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.8e-10215262355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h ++Er+RR+++ + f  L  ++P +     kK +Ka+ +  A++Y+k+L+
  XP_010939468.1 215 QDHVMAERKRREKLGQQFIALSAIIPDL-----KKTDKASLVGGAINYLKQLE 262
                     5699************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814212261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-14216272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7216262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-14216272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.23E-9217266No hitNo description
SMARTSM003533.3E-11218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.719319389IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MRSAFRKQKV HVIEVEDQDF GQEGVRKPSS WQWWGKRNRS VHIGAFTWVN STLPYEEGEE  60
KDVPHALKEE KLLQVRLKKD EYSTFIFPSE MTSLDHFDAQ EIIRSLGEDF EYPSCFSSFD  120
SPGNTELNAP MNCSSMEVSE GPIDVNKADG VPGAVPNASS ISLISFGHPE PVHDPLGLWP  180
RNESFYCSHG STSNEKTLDF RRPERNRMMS RSTSQDHVMA ERKRREKLGQ QFIALSAIIP  240
DLKKTDKASL VGGAINYLKQ LEEKVKTLEE QAVKKNTRPI VFVKKSHLST NNAISNADGS  300
SPDKAIQKVE ASLEGKTILM RIHCEKKKGI LVKVLSEIEK LHLSVINTGV VPFTDSSLNI  360
TVTAQIEEGF SMTVQDLVKE LNSALSQLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-13209265157Transcription factor MYC2
5gnj_B9e-13209265157Transcription factor MYC2
5gnj_E9e-13209265157Transcription factor MYC2
5gnj_F9e-13209265157Transcription factor MYC2
5gnj_G9e-13209265157Transcription factor MYC2
5gnj_I9e-13209265157Transcription factor MYC2
5gnj_M9e-13209265157Transcription factor MYC2
5gnj_N9e-13209265157Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225ERKRRE
2221226RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019710695.10.0transcription factor bHLH18-like
RefseqXP_029124409.10.0transcription factor bHLH18-like
TrEMBLA0A3Q0HXN61e-147A0A3Q0HXN6_PHODC; transcription factor bHLH18-like
STRINGXP_008785755.11e-154(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-45bHLH family protein