PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939421.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family HSF
Protein Properties Length: 317aa    MW: 35456.1 Da    PI: 10.4378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939421.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.8e-34301212102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++i+e++ ++e+isw ++g+sfvv+++ efa+++Lp +Fkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+++ll++
  XP_010939421.1  30 FLTKTHQIVEERGTDEVISWGDKGRSFVVWKPVEFARDLLPAHFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRQGEQRLLRE 115
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_010939421.1 116 IRRRKA 121
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3626119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.5E-5526119IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.76E-3226119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.5E-183053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-3030119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.5E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAAKKGGRQN NNNSSSSCCN GRSGGGPAPF LTKTHQIVEE RGTDEVISWG DKGRSFVVWK  60
PVEFARDLLP AHFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANENFRQGEQ RLLREIRRRK  120
AAPPQAPPAG KSNAGQHHPH PPSSTSNSGE VHSSSSTSSP PPPPPPPPQQ LFNWTNENDK  180
LKKDNKRLGN ELAQAKKRCR ELLGVLSKFM DVGALDIGLL MREKGLMEAT LWREETKNEK  240
IVEEEVGKKE EGPRLFGVLL KGFEGEESKK SKREKRRRCE EGGEVCGAGE RPMKMGFGAP  300
WMRLSTPVQQ GSGKVYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B4e-21301225108Heat shock factor protein 2
5d8l_B4e-21301225108Heat shock factor protein 2
5d8l_D4e-21301225108Heat shock factor protein 2
5d8l_F4e-21301225108Heat shock factor protein 2
5d8l_H4e-21301225108Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180186LKKDNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939421.10.0heat stress transcription factor B-1
SwissprotQ67TP93e-79HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLA0A2H3YE321e-151A0A2H3YE32_PHODC; heat stress transcription factor B-1-like
STRINGXP_008797267.11e-152(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.15e-51heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]