PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939355.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 372aa    MW: 41265.2 Da    PI: 6.2403
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939355.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.8e-10212260355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_010939355.1 212 NSHSLAERVRREKISERMRLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 260
                     58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17207277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-10207264No hitNo description
Gene3DG3DSA:4.10.280.101.6E-16209276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.51209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7212260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-10215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MFSAQRSDQA MGTSSMTTPR SSANVTEQYL VTDWNSLVSV DQNMDFSGPS SISSYNVRVP  60
QNQEFNCSIA DTRPSSFGNE SFPEMVSSFD LSESCKVADA VCPPSFPSTN KHSFEKNLKG  120
KKRKSLTECG AVHPHSSLER IQKAGVEQQK DLSPESAKSP TERDEKKQKS ELNPGVTSHK  180
QAAKLAKEHS QDDDALKEDY IHVRAKRGQA TNSHSLAERV RREKISERMR LLQDLVPGCN  240
KITGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVSPELNFD LEQILSKDIF HAQDGGSAVL  300
GFGPRMSSLR PHLYGPSPHG VMQSEIMCSV PHSEDMISSV WHDELQNVVQ MGFVPNAAVT  360
DTENNDSMKV EL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939355.10.0transcription factor bHLH74 isoform X3
SwissprotQ9CAA98e-59BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A3Q0HXH40.0A0A3Q0HXH4_PHODC; transcription factor bHLH74-like
STRINGXP_008785728.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]