PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

XP_010939353.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 414aa MW: 46284.9 Da PI: 6.5724

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939353.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.4e-10	212	260	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010939353.1 212 NSHSLAERVRREKISERMRLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 260 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.11E-17	207	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-10	207	264	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.9E-16	209	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.51	209	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	212	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.3E-10	215	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MFSAQRSDQA MGTSSMTTPR SSANVTEQYL VTDWNSLVSV DQNMDFSGPS SISSYNVRVP 60 QNQEFNCSIA DTRPSSFGNE SFPEMVSSFD LSESCKVADA VCPPSFPSTN KHSFEKNLKG 120 KKRKSLTECG AVHPHSSLER IQKAGVEQQK DLSPESAKSP TERDEKKQKS ELNPGVTSHK 180 QAAKLAKEHS QDDDALKEDY IHVRAKRGQA TNSHSLAERV RREKISERMR LLQDLVPGCN 240 KITGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVSPELNFD LEQILSKDIF HAQDGGSAVL 300 GFGPRMSSLR PHLYGPSPHG VMQSEIMCSV PHSEDMISSV WHDELQNVVQ MGFVPNAAVT 360 DTENNDCCTS KDSWPSGAEE RRVVQFQRPN HFSSFFRRIY EVFMMILYSL SSNS

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MFSAQRSDQA MGTSSMTTPR SSANVTEQYL VTDWNSLVSV DQNMDFSGPS SISSYNVRVP  60
QNQEFNCSIA DTRPSSFGNE SFPEMVSSFD LSESCKVADA VCPPSFPSTN KHSFEKNLKG  120
KKRKSLTECG AVHPHSSLER IQKAGVEQQK DLSPESAKSP TERDEKKQKS ELNPGVTSHK  180
QAAKLAKEHS QDDDALKEDY IHVRAKRGQA TNSHSLAERV RREKISERMR LLQDLVPGCN  240
KITGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVSPELNFD LEQILSKDIF HAQDGGSAVL  300
GFGPRMSSLR PHLYGPSPHG VMQSEIMCSV PHSEDMISSV WHDELQNVVQ MGFVPNAAVT  360
DTENNDCCTS KDSWPSGAEE RRVVQFQRPN HFSSFFRRIY EVFMMILYSL SSNS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269\|PubMed:23161888, ECO:0000269\|PubMed:24130508}.
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939355.1	0.0	transcription factor bHLH74 isoform X3
Swissprot	Q6NKN9	5e-59	BH074_ARATH; Transcription factor bHLH74
Swissprot	Q9CAA9	3e-58	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A0A3Q0HXH4	0.0	A0A3Q0HXH4_PHODC; transcription factor bHLH74-like
STRING	XP_008785728.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]