PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

HD-ZIP

Protein Properties

Length: 278aa MW: 30951.1 Da PI: 9.1129

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010939328.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	1e-18	130	184	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k XP_010939328.1 130 RKKLRLTKEQSALLEERFKEHSTLNPKQKQALAKQLHLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP
2	HD-ZIP_I/II	123.3	1.1e-39	130	219	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l++en+rL+ke +eL+ +l XP_010939328.1 130 RKKLRLTKEQSALLEERFKEHSTLNPKQKQALAKQLHLRPRQVEVWFQNRRARTKLKQTEVDCEILKRCCETLTDENRRLKKELQELK-AL 219 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-17	121	187	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	126	186	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.84E-18	127	187	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-15	128	190	IPR001356	Homeobox domain
CDD	cd00086	2.08E-16	130	187	No hit	No description
Pfam	PF00046	4.1E-16	130	184	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	161	184	IPR017970	Homeobox, conserved site
Pfam	PF02183	2.3E-11	186	220	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	2.8E-23	186	229	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009735	Biological Process	response to cytokinin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MEMSQDDMCD TGLALGLGIR GRSSSSSDLH HRHEPWSTFP SITKPCKPSL TLGLSSGVYG 60 ATAVTKAESH KTYNEEFTPA RLSSPHSTLS SFSTAYPPSI KREKDAGSDV GEVERVFSRA 120 SDEEEDASAR KKLRLTKEQS ALLEERFKEH STLNPKQKQA LAKQLHLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEILKRCCE TLTDENRRLK KELQELKALK FASPLYMRFP AAALTMCPSC 240 ERVSGASNGS SKGSGPEPFM VAQPKPHLLN PFTHSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	186	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00477	DAP	Transfer from AT4G37790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939328.1	0.0	homeobox-leucine zipper protein HAT9
Swissprot	P46604	1e-76	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	A0A2H3XXM3	1e-119	A0A2H3XXM3_PHODC; homeobox-leucine zipper protein HAT9-like
STRING	XP_008785763.1	1e-144	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2055	36	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-63	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]