PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939277.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 645aa    MW: 68895.5 Da    PI: 4.9062
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939277.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.81.1e-1042676442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPil 91 
                      ++Ll+cA+ +++++  la + L +++e as  gdp++R+a+yf+eAL +r++      y++ p+s+ ++ +     +++ +  +k+f++++P+ 
  XP_010939277.1 267 LQALLDCAR-IADSNPDLAAKSLDKIRESASDLGDPTERVAFYFAEALYSRISVADGDPYRKDPSSPPPSATsydssTEDFTLCYKAFNDACPYS 360
                     689*****9.8888**************************************99555555444333333333344557778889999******** PP

            GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                     kf+hltaNqaIlea+e+++r+HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p+ g   + +l  tg+rL++fA+ l+++f+f++ v 
  XP_010939277.1 361 KFAHLTANQAILEATESASRIHIIDFGIIQGVQWAALLQALATRPAGKPaKIRISGIPAPALGdsPAASLAVTGNRLRNFAALLDLDFDFEP-VL 454
                     *********************************************66555**********99998999************************.79 PP

            GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                     + l++l+ +++rv+pgE++aVn++lql +ll + ++l +    vL+l ksl P vv++ e ea++n+  F+erf  al +y+a+f+sle ++ r 
  XP_010939277.1 455 TPLAELTASTFRVEPGESVAVNSMLQLNTLLGDATDLVE---PVLRLAKSLGPAVVTLGEYEANLNRFGFVERFGAALACYAAVFESLEPGMDRG 546
                     9******************************88888888...9**************************************************** PP

            GRAS 279 seerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsv 370
                     s er  vEr llg +i+ +v   +   r+  +e  e W + ++++G++p+++s++a++qaklll +++ s  yrv e    ++ l WkdrpL++v
  XP_010939277.1 547 SAERLRVERLLLGHRIRAAVGPGKVPnRQDGMEGREGWTALMGRCGLGPLAVSNYAVSQAKLLLWNYDySSKYRVFEFPPGFIsLAWKDRPLLTV 641
                     ********************9877654999**************************************9999***988887777*********** PP

            GRAS 371 SaW 373
                     S+W
  XP_010939277.1 642 SSW 644
                     *** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.469240623IPR005202Transcription factor GRAS
PfamPF035143.9E-102267644IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QKQQQQQQRQ QQQQGIATSV NPFSVNPQPW GPNHHHQPPI  60
PDNFPFVLPD SADFHDPFAP DSGPSSVLGF HPSVHLDHGP FRLSDFGSSA SAAAAVVSVA  120
GDFDSDEWME SLIGESPAES SHLMTDAWQG GGAATAAVEI PPLFADTFAS CSAVITVPSP  180
ASTSDLNRVV FSDAANISTP ALVHHQTVTI HSQNPAPPPQ KVPVQTVASP ASTFDPPKKM  240
NDAGSGAEVV RDPAVAGKPP SPPPPLLQAL LDCARIADSN PDLAAKSLDK IRESASDLGD  300
PTERVAFYFA EALYSRISVA DGDPYRKDPS SPPPSATSYD SSTEDFTLCY KAFNDACPYS  360
KFAHLTANQA ILEATESASR IHIIDFGIIQ GVQWAALLQA LATRPAGKPA KIRISGIPAP  420
ALGDSPAASL AVTGNRLRNF AALLDLDFDF EPVLTPLAEL TASTFRVEPG ESVAVNSMLQ  480
LNTLLGDATD LVEPVLRLAK SLGPAVVTLG EYEANLNRFG FVERFGAALA CYAAVFESLE  540
PGMDRGSAER LRVERLLLGH RIRAAVGPGK VPNRQDGMEG REGWTALMGR CGLGPLAVSN  600
YAVSQAKLLL WNYDYSSKYR VFEFPPGFIS LAWKDRPLLT VSSWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1552656453375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939277.10.0scarecrow-like protein 4
TrEMBLA0A2H3XLP40.0A0A2H3XLP4_PHODC; SCARECROW-LIKE protein 7-like
STRINGXP_008785667.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-153GRAS family protein