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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | GRAS | ||||||||
Protein Properties | Length: 645aa MW: 68895.5 Da PI: 4.9062 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 341.8 | 1.1e-104 | 267 | 644 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.....sseelaalklfsevsPil 91 ++Ll+cA+ +++++ la + L +++e as gdp++R+a+yf+eAL +r++ y++ p+s+ ++ + +++ + +k+f++++P+ XP_010939277.1 267 LQALLDCAR-IADSNPDLAAKSLDKIRESASDLGDPTERVAFYFAEALYSRISVADGDPYRKDPSSPPPSATsydssTEDFTLCYKAFNDACPYS 360 689*****9.8888**************************************99555555444333333333344557778889999******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183 kf+hltaNqaIlea+e+++r+HiiDf+i qG+QW+aLlqaLa+Rp+g+p ++Ri g+ +p+ g + +l tg+rL++fA+ l+++f+f++ v XP_010939277.1 361 KFAHLTANQAILEATESASRIHIIDFGIIQGVQWAALLQALATRPAGKPaKIRISGIPAPALGdsPAASLAVTGNRLRNFAALLDLDFDFEP-VL 454 *********************************************66555**********99998999************************.79 PP GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 + l++l+ +++rv+pgE++aVn++lql +ll + ++l + vL+l ksl P vv++ e ea++n+ F+erf al +y+a+f+sle ++ r XP_010939277.1 455 TPLAELTASTFRVEPGESVAVNSMLQLNTLLGDATDLVE---PVLRLAKSLGPAVVTLGEYEANLNRFGFVERFGAALACYAAVFESLEPGMDRG 546 9******************************88888888...9**************************************************** PP GRAS 279 seerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsv 370 s er vEr llg +i+ +v + r+ +e e W + ++++G++p+++s++a++qaklll +++ s yrv e ++ l WkdrpL++v XP_010939277.1 547 SAERLRVERLLLGHRIRAAVGPGKVPnRQDGMEGREGWTALMGRCGLGPLAVSNYAVSQAKLLLWNYDySSKYRVFEFPPGFIsLAWKDRPLLTV 641 ********************9877654999**************************************9999***988887777*********** PP GRAS 371 SaW 373 S+W XP_010939277.1 642 SSW 644 *** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.469 | 240 | 623 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-102 | 267 | 644 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 645 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIQ QKQQQQQQRQ QQQQGIATSV NPFSVNPQPW GPNHHHQPPI 60 PDNFPFVLPD SADFHDPFAP DSGPSSVLGF HPSVHLDHGP FRLSDFGSSA SAAAAVVSVA 120 GDFDSDEWME SLIGESPAES SHLMTDAWQG GGAATAAVEI PPLFADTFAS CSAVITVPSP 180 ASTSDLNRVV FSDAANISTP ALVHHQTVTI HSQNPAPPPQ KVPVQTVASP ASTFDPPKKM 240 NDAGSGAEVV RDPAVAGKPP SPPPPLLQAL LDCARIADSN PDLAAKSLDK IRESASDLGD 300 PTERVAFYFA EALYSRISVA DGDPYRKDPS SPPPSATSYD SSTEDFTLCY KAFNDACPYS 360 KFAHLTANQA ILEATESASR IHIIDFGIIQ GVQWAALLQA LATRPAGKPA KIRISGIPAP 420 ALGDSPAASL AVTGNRLRNF AALLDLDFDF EPVLTPLAEL TASTFRVEPG ESVAVNSMLQ 480 LNTLLGDATD LVEPVLRLAK SLGPAVVTLG EYEANLNRFG FVERFGAALA CYAAVFESLE 540 PGMDRGSAER LRVERLLLGH RIRAAVGPGK VPNRQDGMEG REGWTALMGR CGLGPLAVSN 600 YAVSQAKLLL WNYDYSSKYR VFEFPPGFIS LAWKDRPLLT VSSWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-155 | 265 | 645 | 3 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939277.1 | 0.0 | scarecrow-like protein 4 | ||||
TrEMBL | A0A2H3XLP4 | 0.0 | A0A2H3XLP4_PHODC; SCARECROW-LIKE protein 7-like | ||||
STRING | XP_008785667.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8569 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-153 | GRAS family protein |