PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010939213.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 188aa MW: 21053.2 Da PI: 8.3606 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 56.3 | 1.4e-17 | 2 | 58 | 2 | 58 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqlla 58 d++ +e+vCyv+C++Cnt+lav vP + l+ +vtv+CGhC +l ++ + ++q+ XP_010939213.1 2 DLVPPTEHVCYVRCTYCNTVLAVGVPCKWLMDTVTVKCGHCNHLSFLSPRPMMQTFC 58 77889************************************9986665555555544 PP | |||||||
2 | YABBY | 94.7 | 2.2e-29 | 79 | 144 | 97 | 162 |
YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 ss + s+++++ +p++ v++PPek+ r Psaynrf+keeiqrika+ Pdi hreafs+aaknWa XP_010939213.1 79 SSPSSSTSSEKMIPKASFVVKPPEKKHRLPSAYNRFMKEEIQRIKAAKPDIPHREAFSMAAKNWAK 144 4445578899999***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.9E-48 | 6 | 145 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-8 | 94 | 146 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-5 | 99 | 146 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence Send to blast |
MDLVPPTEHV CYVRCTYCNT VLAVGVPCKW LMDTVTVKCG HCNHLSFLSP RPMMQTFCPT 60 DHQMAFQGPC NDCWRGQPSS PSSSTSSEKM IPKASFVVKP PEKKHRLPSA YNRFMKEEIQ 120 RIKAAKPDIP HREAFSMAAK NWAKCDPRCS TTVSASDGAA GTVIFPHEGE NGLTVERFDA 180 FKQLERKD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939213.1 | 1e-141 | protein DROOPING LEAF isoform X1 | ||||
Swissprot | Q76EJ0 | 2e-87 | YABDL_ORYSJ; Protein DROOPING LEAF | ||||
TrEMBL | A0A2H3XLR8 | 1e-120 | A0A2H3XLR8_PHODC; protein DROOPING LEAF | ||||
STRING | XP_008785629.1 | 1e-121 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5951 | 36 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69180.1 | 1e-51 | YABBY family protein |