 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010939189.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
|
| Family |
TCP |
| Protein Properties |
Length: 349aa MW: 39319.3 Da PI: 8.873 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010939189.1 | genome | OG | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 94.1 | 2.8e-29 | 72 | 181 | 3 | 89 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88
g+kdrhsk+ T +g+RdRRvRls++ a++++dLqd+LG+ ++sk ++WLl++a+++i++l+ ++ +++ + + s+s ++s++ ++
XP_010939189.1 72 GGKDRHSKVRTIKGLRDRRVRLSVPAAIQLYDLQDKLGLNQPSKVVDWLLNAAQHEIDKLPPLQLPPEFFI-QFSQSMATSHKLAPnkapsflpf 165
78*************************************************************88888555.33333333322222233445555 PP
TCP 89 ...............k 89
+
XP_010939189.1 166 rdgaelvyddrarqlA 181
5555555444444331 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009965 | Biological Process | leaf morphogenesis |
| GO:0030154 | Biological Process | cell differentiation |
| GO:0045962 | Biological Process | positive regulation of development, heterochronic |
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MMKSPPYAGN PQLQLTNCLQ SDESITMIRD SREEELLTKQ GGGTNDDRFA VSSRLWSALK 60
NPRIVRVSRT FGGKDRHSKV RTIKGLRDRR VRLSVPAAIQ LYDLQDKLGL NQPSKVVDWL 120
LNAAQHEIDK LPPLQLPPEF FIQFSQSMAT SHKLAPNKAP SFLPFRDGAE LVYDDRARQL 180
ASSSTMANGD MLDNNTGANE MMVQKSTFWS SNVLMKNKEK ATMKEPNIDK GSMIKGNDVG 240
SDGMQNNAMY TSYHHWNPPN EHISHLGSHL PQEEELHNYQ PGSMFAAYMN ASTDFAKQYH 300
HLDMANSASK FLPSTSLRNS LQFTGDPSLK LLQPNFGFKH HHPQDHQEG
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5zkt_A | 5e-18 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
| 5zkt_B | 5e-18 | 78 | 132 | 1 | 55 | Putative transcription factor PCF6 |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G60970.1 | 1e-42 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
