PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010939167.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 606aa    MW: 69403.5 Da    PI: 5.1724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010939167.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015578595320
                     ETTTTEEESSHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                     C  Cg+sF ++  L +H+
  XP_010939167.1 578 CDTCGESFESRNKLFVHL 595
                     *****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.2E-24580IPR001623DnaJ domain
SuperFamilySSF465654.45E-24680IPR001623DnaJ domain
SMARTSM002719.7E-24771IPR001623DnaJ domain
PROSITE profilePS5007619.308879IPR001623DnaJ domain
CDDcd062573.79E-15868IPR001623DnaJ domain
PfamPF002261.5E-21976IPR001623DnaJ domain
PRINTSPR006253.6E-151028IPR001623DnaJ domain
PRINTSPR006253.6E-152843IPR001623DnaJ domain
PRINTSPR006253.6E-155171IPR001623DnaJ domain
PROSITE patternPS0063605675IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.85E-12310356No hitNo description
SMARTSM004515.1E-6312346IPR003604Zinc finger, U1-type
SMARTSM003553.5315339IPR015880Zinc finger, C2H2-like
PfamPF121712.4E-10315340IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280317339IPR007087Zinc finger, C2H2
SMARTSM003557.6576600IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.099576605IPR007087Zinc finger, C2H2
PROSITE patternPS000280578600IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MAEGRKRCLY EVLGVHRDCS QDEIRAAYKR LALQLHPDKL ASSASATSAA DATAAFQELR  60
HAYEVLSDPK ERAWYDSHRS QILFSSPSSA SKSHRPSAFF DLDLYAFFSN SAFSGYSDAG  120
KGFYRVYGDL FDKVYAQELW FAKELDLGAD AVAPAPLIGN LDSSYSQVTA FYNYWLGFCT  180
VMDFGWVDEY DASMGPNRRT RRAMEEENKK VRKKAKREYI DTVRGLAAFV KKRDKRVIDM  240
TAKRNLEEEK RRAEEKARKK EEERKKMERA RMYEEPEWAK IDEEEEKTAM RGGFDDLEEE  300
DDKKKKKKEG AGEELYCVVC NKKFKSDKQW KNHEQSKKHR DKVAELRMTF KEEDKVLEEE  360
EEEAADEEGV HVGFDYEPPE SEESDMVDEL CEELREEIRF QEDGSDDEDL EYSDRKVGSD  420
DEASILEAMV SGHKNRKNDS QDLHDSTSNY DHYLDNDEQN SIGYDSKRSR KNRAPKKRTG  480
ADMYDEAKRP EMGESQQEDS EVQNQEDNIE DNKEVISSPL EEVATRSKGG RATVKNQKSK  540
KQSVDGKGAG RKDTTADSKN PSKGRKQKAT SKALSNACDT CGESFESRNK LFVHLGATGH  600
AMLKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216KKVRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939167.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9111e-158JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2H3Y0E60.0A0A2H3Y0E6_PHODC; DNAJ protein JJJ1 homolog
STRINGXP_008791313.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP843378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-140DNAJ heat shock N-terminal domain-containing protein