PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010939029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | NAC | ||||||||
Protein Properties | Length: 404aa MW: 43955.9 Da PI: 4.5658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.1 | 7.5e-19 | 18 | 126 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 tdeelv + + g++++ +vi+ev ++vePw+ p e+ wy + + d ++ +g+ + ++t++gyWk g + +s + +vg k+ XP_010939029.1 18 TDEELV-LFVGGRKFGDPVPD-NVITEVSPFSVEPWNSP------EDMWYLYNPDDPQSLNGECEIKVTRTGYWKPMGGLRIFTS--TPTVGRKT 102 899999.66777777778777.89**************9......468******************************9776665..889***** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 t fy g+ap+g kt W+mhey+ XP_010939029.1 103 TREFYIGKAPNGDKTGWTMHEYQT 126 **********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.229 | 9 | 149 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-9 | 17 | 125 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.63E-27 | 17 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MCPSAPFSVP LDINASSTDE ELVLFVGGRK FGDPVPDNVI TEVSPFSVEP WNSPEDMWYL 60 YNPDDPQSLN GECEIKVTRT GYWKPMGGLR IFTSTPTVGR KTTREFYIGK APNGDKTGWT 120 MHEYQTEQKT HQGINKEQDH CSLYRVFFQI NERPNHEEQH NSMIADAADG DYLEHVLLNL 180 LEQENNSSSS GAGNRSQMVG RDQQGQSVLS GTSVTGPETD SSAEDVYATC DFSKGDYLEL 240 NDLYSPGTSS SSSDNSSLMS VNSDEYFDAD ALLRDLENEH NPRVEEEHAD CRYSVSASVK 300 SNQVVIRPPP SGSVCGNSSS NLVAEGGAFA NPMPERAWAS GPSSSAYELS HNRKASSSGK 360 SPGSDSDQSS SGSSRGSRTS RGQGLKTVGR IAKLGKYYCC CGSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-17 | 3 | 147 | 11 | 163 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-17 | 3 | 147 | 11 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-17 | 3 | 147 | 11 | 163 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-17 | 3 | 147 | 11 | 163 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-17 | 3 | 147 | 11 | 163 | NAC domain-containing protein 19 |
4dul_B | 5e-17 | 3 | 147 | 11 | 163 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939029.1 | 0.0 | NAC domain-containing protein 96 isoform X3 | ||||
TrEMBL | A0A2H3YZI3 | 0.0 | A0A2H3YZI3_PHODC; NAC transcription factor 25-like isoform X1 | ||||
STRING | XP_008806190.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 7e-23 | NAC domain containing protein 28 |