PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB

Protein Properties

Length: 295aa MW: 33042.1 Da PI: 6.7847

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938925.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+++++ g+ R+ k+c++rw +yl XP_010938925.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPANTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	46.4	9.4e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_010938925.1 67 RGNFTPHEEGMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.502	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.59E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-13	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.015	66	116	IPR017930	Myb domain
Pfam	PF00249	4.1E-13	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	5.50E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009416	Biological Process	response to light stimulus
GO:0009737	Biological Process	response to abscisic acid
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0010118	Biological Process	stomatal movement
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MGRSPCCDKI GIKKGPWTPE EDIILVSYIQ EHGPGNWRAV PANTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIKKYQ 120 TAIDNYMIST DSGSTHHDII SKGYQKDAIR NPDLAGSHSP PSRFHQSPST YASSTENISR 180 LLEGWMRSSP KFTQDKNQRS NIIDNEDNES LGDQGSYAAV TKENLDSLIS LENFSSIVLQ 240 GPELAQADAE TKHGVAEGQQ QPPLFFLEKW LLDEASGQVD GLMELPADCC SNPML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	6e-25	14	116	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-24	14	116	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-24	14	116	58	159	MYB PROTO-ONCOGENE PROTEIN
1h8a_C	1e-24	12	116	25	128	MYB TRANSFORMING PROTEIN
1mse_C	7e-25	14	116	4	105	C-Myb DNA-Binding Domain
1msf_C	7e-25	14	116	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00132	DAP	Transfer from AT1G08810	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010938925.1	0.0	transcription factor MYB60
Swissprot	B3VTV7	1e-115	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A2H3WZE0	0.0	A0A2H3WZE0_PHODC; myb-related protein 306-like
STRING	XP_008775987.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP229	38	296

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	3e-99	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]