PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938807.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 371aa MW: 39948.1 Da PI: 4.6447

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938807.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	195	240	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + + r R+r+ ++ L+ ++P++ K + + L ++YIk L XP_010938807.1 195 QAAASRRLHRARVTAGIKALQNCIPSS-----DKCNRESALDDIIDYIKFL 240 55566677899*************8.....7**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-7	189	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.321	191	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-6	209	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MSAMVPLPEQ FRDVSVNLVT ASGNEKCPIS QHVFPPQFRY LQVHGNHVNL LSAPPVTFGP 60 RQLHAIPAGD ILEGVVLPTT SFDAGKDISG FQTYNAYDNS RFSDNPLLNR LNNSSIPDIG 120 SSRVNQAVPA PTSINTETAS DFSKVLCPIE SDDPVEDMVF PMSCTSIQQK PDDDSDNSAE 180 PNSKVMFSSR EARAQAAASR RLHRARVTAG IKALQNCIPS SDKCNRESAL DDIIDYIKFL 240 KLQLKIKSQF VLLDLSLGGD DMDMGHEEAL MPMDLPMVEV GSRLAHLKQA RSLCFSTCCQ 300 MEMGLSSSGP NMVVQLGLGL SNVGSLPIAY LGPTVKNQLL GNGGGGSEEQ GEIDGGSEEQ 360 GGSECCHVSW C

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MSAMVPLPEQ FRDVSVNLVT ASGNEKCPIS QHVFPPQFRY LQVHGNHVNL LSAPPVTFGP  60
RQLHAIPAGD ILEGVVLPTT SFDAGKDISG FQTYNAYDNS RFSDNPLLNR LNNSSIPDIG  120
SSRVNQAVPA PTSINTETAS DFSKVLCPIE SDDPVEDMVF PMSCTSIQQK PDDDSDNSAE  180
PNSKVMFSSR EARAQAAASR RLHRARVTAG IKALQNCIPS SDKCNRESAL DDIIDYIKFL  240
KLQLKIKSQF VLLDLSLGGD DMDMGHEEAL MPMDLPMVEV GSRLAHLKQA RSLCFSTCCQ  300
MEMGLSSSGP NMVVQLGLGL SNVGSLPIAY LGPTVKNQLL GNGGGGSEEQ GEIDGGSEEQ  360
GGSECCHVSW C

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019710309.1	1e-179	transcription factor bHLH7
TrEMBL	A0A2H3ZAW7	1e-129	A0A2H3ZAW7_PHODC; transcription factor bHLH82-like isoform X1
STRING	XP_008810758.1	1e-129	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	4e-08	LJRHL1-like 1