PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | ARR-B | ||||||||
Protein Properties | Length: 744aa MW: 81549.6 Da PI: 6.027 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 85.1 | 7e-27 | 213 | 266 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ +LH++Fv av+qL +kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl XP_010938329.1 213 KPRVVWSVDLHQQFVAAVNQL-HVDKAVPKKILELMNVPGLTRENVASHLQKYRL 266 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 75.8 | 1.6e-25 | 32 | 140 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+p+ +++l ++l+k y +v++++ + al++l+e++ +Dl+l D+ mp+mdG++ll++i e +lp+i+++a + + + + + G XP_010938329.1 32 VLVVDDDPTCLKILDRMLRKCLY-DVTTCSRAAVALAMLRERKgaFDLVLSDVYMPDMDGFKLLEHIGLEM-DLPVIMMSADDGRDVVMKGVTHG 124 89*********************.***************999999**********************6654.8********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l++ XP_010938329.1 125 ACDYLIKPVRMEALRN 140 ************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.55E-36 | 29 | 156 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.7E-42 | 29 | 171 | No hit | No description |
SMART | SM00448 | 4.2E-30 | 30 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.161 | 31 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.3E-23 | 32 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.45E-29 | 33 | 145 | No hit | No description |
PROSITE profile | PS51294 | 9.718 | 210 | 269 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.91E-19 | 210 | 270 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-29 | 212 | 271 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-23 | 213 | 266 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.5E-6 | 215 | 265 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence Send to blast |
MDPNRAAAST ASSGRPRDGV GHPPDFPAGL RVLVVDDDPT CLKILDRMLR KCLYDVTTCS 60 RAAVALAMLR ERKGAFDLVL SDVYMPDMDG FKLLEHIGLE MDLPVIMMSA DDGRDVVMKG 120 VTHGACDYLI KPVRMEALRN IWQHVVRKRR NELKELEHSG SAEENDKQKR ALDDGDNASS 180 ASEVSWKNVK RRKDGKEEEE EIEEREDPST LKKPRVVWSV DLHQQFVAAV NQLHVDKAVP 240 KKILELMNVP GLTRENVASH LQKYRLYLRR LNVPQNQARL DTPYTGASEA TFHSVGSFDG 300 LDIQSLAVAG QFPPQSLMAL NSEPRRITTT GIGLSSVDQI GFNPSAQMAN ASNIRPAMMQ 360 QMSNKQLNFL SGPSSSMESG LLGQSQQPVP SYGNMGLRVS DGASGFFSLP SSQRTSTSFS 420 GGTINANMTN SLVMQMTRQG QQFSLSQQQN RIHINMPQQP QTRGQLPNAI AAEHDSRLST 480 TMGHQILSNE VSRHGSGRCG SNMNVCTSLP EGYMNASSYG AVSQALYADF SNSCMNESTG 540 SSYPLATGAG ATTFTSTGML QDAFPPVGNV EALGNSTSLK GVDFVPDYDL LSEVHQSKSR 600 DWKLQNINIS YQLAQQLGSK QSNIDFGSSL LAHQDPIATI KDESSRNTCI VRKETFSVRT 660 DIEREKGECI AQCNSTILVE NSVRVKAEGM SDLSYQGGLF DGNIIQNELM DVVGKKQEGI 720 GQVDPEFNFD GYSLDDIQGA VQKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-20 | 212 | 272 | 4 | 64 | ARR10-B |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 192 | KNVKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938329.1 | 0.0 | two-component response regulator ARR2 isoform X2 | ||||
TrEMBL | A0A2H3XYV5 | 0.0 | A0A2H3XYV5_PHODC; two-component response regulator ARR1-like isoform X2 | ||||
STRING | XP_008790852.1 | 0.0 | (Phoenix dactylifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16857.2 | 1e-135 | response regulator 1 |