PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010938301.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CAMTA
Protein Properties Length: 958aa    MW: 107228 Da    PI: 6.6252
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010938301.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1157.92e-49331455117
            CG-1   5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                      +rwl+++e++aiL n + ++++ ++ ++pksg+++L++r ++r+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa+s+++p+f rrcy
  XP_010938301.1  33 LTRWLRPNEVHAILSNSTLFKIQPQPSENPKSGTILLFDRTMLRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEERIHVYYARSDDDPNFYRRCY 127
                     68********************************************************************************************* PP

            CG-1 100 wlLeeelekivlvhylev 117
                     wlL+++le+ivlvhy+++
  XP_010938301.1 128 WLLDKNLERIVLVHYRQT 145
                     ***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143769.8525151IPR005559CG-1 DNA-binding domain
SMARTSM010765.0E-6228146IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4433144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812963.29E-12402488IPR014756Immunoglobulin E-set
CDDcd002041.09E-13573703No hitNo description
PfamPF127962.3E-6591672IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.6E-14593709IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.95E-14594709IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.239611676IPR020683Ankyrin repeat-containing domain
SMARTSM002481.6E-5644673IPR002110Ankyrin repeat
PROSITE profilePS5008811.568644676IPR002110Ankyrin repeat
SMARTSM002484100683712IPR002110Ankyrin repeat
SuperFamilySSF525401.91E-7759863IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.144794823IPR000048IQ motif, EF-hand binding site
SMARTSM000153812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.675813842IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015815833IPR000048IQ motif, EF-hand binding site
SMARTSM000151.6E-4835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.182836860IPR000048IQ motif, EF-hand binding site
PfamPF006123.3E-5837857IPR000048IQ motif, EF-hand binding site
SMARTSM000151.1916938IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.157918946IPR000048IQ motif, EF-hand binding site
PfamPF006120.099919938IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MEAGDSAPLT GAGIHGFQTV ADLRIEKLME DALTRWLRPN EVHAILSNST LFKIQPQPSE  60
NPKSGTILLF DRTMLRNFRK DGHNWKKKKD GKTVQEAHEK LKIGNEERIH VYYARSDDDP  120
NFYRRCYWLL DKNLERIVLV HYRQTSENPP TLVECTDASS LTNRMHHGSP STPMISSGSA  180
RSELSGSAVM SEEINSREDR AINTGSGISL SDKYNELRNQ EFSLHDINTL DWEDLVEPPT  240
STVSVLCREG DALSSVQQMP DGLRNSVNNL SVLPSHDVVE GVPSSGHPTD ITNDNGIDGV  300
NCSGYFQAAK DQENPSLLFE TMNSTIQEAD FKLDSAHSSA SPDIFTGDVF LTHNSFGGWN  360
SMNEDSFGLV TEQLEALNSS GDKSNAFTIM DQSSTTEQIF SISDISPGWA YSTEETKVLV  420
VGHFTDPYKH PMTSNIYCAF GEMHAAAELI QAGVYRCTAM PHPPGSVNFF MTLDGYTPIS  480
QVLSFDYRSV PSDKLDGGVT SSEDDNNNLK GKEFQVQTRL AHLLFSTTNN ISIQSSRTQS  540
KSLKEAKRYA SVTSPLMEKD WMNLLRLSSN GEAFHVPATK DLFELVLKNK LQEWLLEKVA  600
EGCKTPAHDS QGQGVIHLCA ILDYAWAAHL FSLSGMSLDF RDASGWTALH WAAYFGREKM  660
VAALLSAGAN PSLVTDPTPE FPGGCIAADL ASNQGFEGLA AYLAEKGLTA HFQAMSLSGN  720
ISAPLLPSST DKSSSENLYP ENLTEQELCL RESLAAYRNA ADAADRIQAA FRERALKQQT  780
KAVQLVKPEI EAAQIVAALK IQHAFRNYSR RRIMKAAARI QSNFRTWKTR RHFLNMRKHA  840
IKIQAAFRGH QVRKQYHKII WSVGVLEKAI LRWRLKRKGL RGVQVESKEA MKVDSNEEST  900
GEEEFFRISR EQAEERVKRS VIRVQAMFRS HRAQQEYRRM KLAYEQANLE FNELDQRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010938301.10.0calmodulin-binding transcription activator CBT isoform X2
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A2H3XN330.0A0A2H3XN33_PHODC; calmodulin-binding transcription activator CBT isoform X2
STRINGXP_008786234.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators