PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010938284.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 441aa MW: 49043.4 Da PI: 7.1211

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010938284.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28	4.1e-09	227	287	7	54
HHHHHHHHHHHHHHHHHHCTSCCC................TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkas.............kapskKlsKaeiLekAveYIksL 54 ++E++RR+ri ++++ L++l+P+++ + + K + a+i A++Y+++L XP_010938284.1 227 KNEKQRRERIAKKYDDLKSLIPNSTkvndvgfshlfakNILNLKQDRASIIADATDYVNEL 287 68*******************888********999**************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.23	220	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-7	226	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-9	227	299	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-6	227	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-9	229	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.96E-8	229	292	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MHHQSEYFGP NEAISIQGGA GAFGGPSQSN TISHSDLALM GSSSNNVNNL EEKLRLFRFL 60 HEDPNVHHPT SAMGLDLQCQ PGLDPRAEIA TTNLMQANNH QYYFDPTTPS NPFVIGMLNP 120 GNFHYTADMF SGELSPDRTS TGSTILHDPM VHLDFPSQPS LLKDVQNSLP HDTGFFPGPW 180 GFGGSFVGGL DDGYVGQLGR QQSYEKRRKG GSKKGGSIKV EEAGSMKNEK QRRERIAKKY 240 DDLKSLIPNS TKVNDVGFSH LFAKNILNLK QDRASIIADA TDYVNELLRT LKELKILVAE 300 KRHRREWGKK LIMGDGVDGD VESSSTKPLM DDGDRAFRGP LRSSWIQRKS RETFVDVRII 360 EDEVYIKLTQ RKKMNCLVVV SKVLDELQLE LLHLSGGNIG DSHVFIFNTK IHEGSSVYAS 420 AVAKKLIEVL DVQYPPFPVS F

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MHHQSEYFGP NEAISIQGGA GAFGGPSQSN TISHSDLALM GSSSNNVNNL EEKLRLFRFL  60
HEDPNVHHPT SAMGLDLQCQ PGLDPRAEIA TTNLMQANNH QYYFDPTTPS NPFVIGMLNP  120
GNFHYTADMF SGELSPDRTS TGSTILHDPM VHLDFPSQPS LLKDVQNSLP HDTGFFPGPW  180
GFGGSFVGGL DDGYVGQLGR QQSYEKRRKG GSKKGGSIKV EEAGSMKNEK QRRERIAKKY  240
DDLKSLIPNS TKVNDVGFSH LFAKNILNLK QDRASIIADA TDYVNELLRT LKELKILVAE  300
KRHRREWGKK LIMGDGVDGD VESSSTKPLM DDGDRAFRGP LRSSWIQRKS RETFVDVRII  360
EDEVYIKLTQ RKKMNCLVVV SKVLDELQLE LLHLSGGNIG DSHVFIFNTK IHEGSSVYAS  420
AVAKKLIEVL DVQYPPFPVS F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019710386.1	0.0	transcription factor EAT1
TrEMBL	A0A2H3Y4T2	0.0	A0A2H3Y4T2_PHODC; transcription factor EAT1-like
STRING	XP_008793418.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1904	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06170.2	5e-47	bHLH family protein