PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010938282.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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Family | CPP | ||||||||
Protein Properties | Length: 814aa MW: 88839.5 Da PI: 6.5325 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 51.9 | 1.5e-16 | 494 | 532 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+CnCkkskClk+YCeCfaag++Cse C+C++C+Nk XP_010938282.1 494 ACKRCNCKKSKCLKLYCECFAAGVYCSEPCSCQGCFNKP 532 589**********************************96 PP | |||||||
2 | TCR | 50.9 | 3.1e-16 | 579 | 617 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN XP_010938282.1 579 RHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNA 617 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.6E-18 | 493 | 534 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 37.756 | 494 | 619 | IPR005172 | CRC domain |
Pfam | PF03638 | 5.1E-12 | 496 | 531 | IPR005172 | CRC domain |
SMART | SM01114 | 5.6E-17 | 579 | 620 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.2E-11 | 581 | 617 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MDTPERSKIG GTPLSKFEDS PVFSFINSLS PIQPVKSIDP VHSVQSYLPS IPSIFTSPHA 60 NLRESRFLIR NSFSDFSKHE SSSDNVDESN LSTGVLNAVR LSRCTVIAQE NCSIICSLNE 120 ATVDPPDECA TLPGNLPQPE QYDPGSPNHN IAPCFGIKMD FKLDIGHAPL ELVHFVQNGL 180 ERRKNLFVSE TEFLENHPPE QNRDEMVGCE WENLISDDAD SLLIFDSNNE SEACKGPSEK 240 LEDSSKLAGD LDCSQKTQTN ESSGRCVQTA SQDPSVSCSK ENGKQDETDH TPQILSDTCQ 300 SQVVLSDLIE KTANGTSDHI RLGHKVDSQQ QRGMRRRCLV FDTAGFSKKN LQNSSNLHSS 360 ASLLSNEKMA SDDKCSRPGT SHSPCVLPGI GLHLNTLATT SKDRLITQEM LVSGKQLISM 420 PCSVGPFAPT TSGQKSKSLS VEKDMSSNGN EVQNLQIMHD DASQVPALGN GEELNQGSPK 480 KKRRKSENGG ESDACKRCNC KKSKCLKLYC ECFAAGVYCS EPCSCQGCFN KPIHEEMVLA 540 TRKQIESRNP LAFAPKVIRT SETGQETGED ANKTPASARH KRGCNCKKSN CLKKYCECYQ 600 GGVGCSISCR CEGCKNAFGR KEGIVLIGAE EIEQGEEETN PCEREKDKPD DDGQQHANVK 660 IDENHSSENV LSVTPLQTRR PPVKLPLFSS AKPPRSSTLS VGFSPWLFTS QPIRKSEIPL 720 PQHKLEKHVS TALEDDTPDI LRCGASPSNG VKTASPNRKR VSPPHNGIGL SPSRKGGKKL 780 ILKSIPSFPS LTGDVCEDYP MNYSNSSFCS STCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-17 | 496 | 616 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 7e-17 | 496 | 616 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 479 | 483 | KKKRR |
2 | 479 | 484 | KKKRRK |
3 | 480 | 484 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010938282.1 | 0.0 | protein tesmin/TSO1-like CXC 3 isoform X1 | ||||
TrEMBL | A0A2H3XX47 | 0.0 | A0A2H3XX47_PHODC; protein tesmin/TSO1-like CXC 2 | ||||
STRING | XP_008789994.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 1e-122 | Tesmin/TSO1-like CXC domain-containing protein |