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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
XP_010938010.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
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| Family |
bZIP |
| Protein Properties |
Length: 386aa MW: 41481.2 Da PI: 6.7467 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010938010.1 | genome | OG | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.3 | 4.6e-10 | 192 | 239 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52
kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l
XP_010938010.1 192 KRAKRILANRHSAARSKERKARYISELERKVQALQTEATTLSAQLTLF 239
9****************************************9888765 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MLPKSQDPSH LPNPNPSTNL NLSSTFPPNA PAVAAGAVAM FQSAGPAASP RGVHHRRARS 60
ELAFRVPDDL DLSSGDPLEG GSFDIGLEDD LFCAFMDIEK IGCRLEGSGS GSEGGVCRDR 120
AAESSEGGED RKIGNAAGAV AVRPKHRHSN SIDGSSMSSG TTRGEGVFGE VVEAKKAMTA 180
EELAELAAID PKRAKRILAN RHSAARSKER KARYISELER KVQALQTEAT TLSAQLTLFQ 240
RDTTGLSAEN AELKLRLQAM EQQAQLRDAL NEALKQEVQR LKIATGEISN PGETYDTGLQ 300
HVRYSAPFYV LSQQQPVHHQ GIQLQPQSHQ SQPSVSNHQF ARPTALPDRM QQDPLGRLQG 360
LDISKGSLIV KSESSSISAT ESSSTF
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Dai S,Zhang Z,Bick J,Beachy RN
Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
[PMID:16476995] - Liu Y,Dai S,Beachy RN
Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
Biochem. J., 2007. 405(2): p. 243-9
[PMID:17371296] - Dai S, et al.
Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
[PMID:19104064]
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