PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_010937934.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 162aa MW: 18168.8 Da PI: 5.2061

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010937934.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.3	3.2e-44	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+kdC++ap fp+++p++fa+vhk+FGasn++k+l++lp ++reda++slvyeA+ar+rdPvyG+vg i+ lq+++++l+ +la XP_010937934.1 6 PCASCKLLRRRCTKDCIFAPFFPSDDPHRFAIVHKVFGASNISKMLQELPVHQREDAVRSLVYEADARMRDPVYGCVGAISYLQNKVSELQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010937934.1 101 VAQAE 105 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.785	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGGSSPCASC KLLRRRCTKD CIFAPFFPSD DPHRFAIVHK VFGASNISKM LQELPVHQRE 60 DAVRSLVYEA DARMRDPVYG CVGAISYLQN KVSELQMQLA VAQAEILCIP MQQEPSATDQ 120 QMDPDDEPFL MQNNLNGMPQ LMNYGSSSNV AQEPLKRESL WT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-47	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-47	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010937934.1	1e-119	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-72	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2H3YVF9	1e-105	A0A2H3YVF9_PHODC; LOB domain-containing protein 12
STRING	XP_008804108.1	1e-106	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-74	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]